K12942

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12942

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12942

Determination of introduced cDNA(s)

  • J013002I02 - Rice Full-length cDNAs - Original: J013002I02

    full reading [+] show sequence

    Nucleotide sequence: J013002I02 - full reading 
    GAAGCGAACC CAGCGGAATT CGTTGGGCAG CGGGTGCGGG AGCAGTAGAG 
    GAGGAGAGGT AGATGGATTG AGCAATCAAG CCCTGCTCCG GCCGCCGCCG 
    CCGCCGCCGC CGCTGCCGCC GGGCGATCCC CTTACCCTCG CTCTGTGCAC 
    CCGCACCCCG CACTTACCCC CTCCATGGCG TGATCCGATG ATAGCAACGA 
    GAGCGGTGCT TCCCCTCTCC CTGACGGCGT CGGCCTCCGG CCTGTACGGC 
    GCGCGCACCA AGAAGAGGAG GAAGCTGCTG CTGCTGCCGC GGCTGCCATG 
    TCGCCCAATC TGGAGAGCCA CATCAAGAGC CAGGTGCCGG CGCTGCTGCT 
    GAGGCGCTTC TTCGGCGGGG CGGGGCGGCG GCGGGTGTTC GTGCAGACGG 
    AGACTGGGTG CGTGCTGGGC ATGGACCTCG ACCGCAGCGA CAACGCGCAC 
    ACGGTGAAGC GCCGGCTGCA GCTCGCGCTC AACGTGCCCA CCGGCGAGAC 
    CTCGCTCACC TTCGGCGACC GCGTCCTGGA GAATGACCTC TCCTTCATCC 
    GCCCGGACTC GCCGCTGCTG CTCACCCGCA ACAGCATCAA CCGGAGCTGC 
    TCCACGCCCT GCCTCTGCCC GGTGTCCAAG GACTTCGAGC ACAAGGATCG 
    CAGCGGCCTG GTCGAGATGC TCGGCTGCTC GATCAGCTGC GCCCGCGTGA 
    AGCGCCTCGT CGACGACGTG GTCACCGCCA TCAGGAGCGG CGTGGATCGG 
    GTCCCCATTG GCAGTGGGCT TGGTGGCTCC TACTACTACA GGAACATCTC 
    CGGCGACAGG GTTGCCATCG TGAAGCCGAC GGATGAGGAG CCTTTTGCAC 
    CCAACAACCC GAAGGGGTTC GTCGGGAGAG CGCTTGGGCA GCCGGGACTG 
    AAGAAATCTG TCAGGGTGGG AGAGACAGGG TTCAGGGAGG TGGCGGCGTA 
    CCTGTTGGAT CATGATAACT TCGCAAATGT TCCTCCGACG GCGTTGGTGG 
    AGATCACACA CTCAATTTTC CATATCAATT GTCCGGTGAA CGGCGGCAGT 
    CCAGCTCATG ATCAGAAGCA GCAGGTTTCC AGCAAGATCG CTTCGTTTCA 
    GCAGTTCATC GCGCATGACT TCGATGCCAG TGATCATGGC ACGTCGAGCT 
    TCCCGGTTGC TGCTGTTCAT AGGATCGGCA TACTGGATAT CAGAATTTTC 
    AACACTGACA GGCATGCTGG TAATGTGCTG GTGAGGAAGC TTGATGGTGG 
    CACCGGTCGC TTTGGTTGTC AGACGGAATT GTTTCCAATT GATCATGGCC 
    TGTGCTTGCC AGAGAATTTG TAGGACCCTT ATTTCGAGTG GATCCACTGG 
    GCTCAGTCAT CAATCCCATT CTCTGAAGAG GAGCTCGAGT ACATTAAGAA 
    TCTTGATCCA ATGAGGGATG TGGCAATGCT GCGTAGGGAG CTTCCTATAA 
    TCCGCGAGGC CTGCCTTCGT GTCCTGGTGC TGTGCACAAT CTTCCTTAAG 
    GAGGCTGCTG CTTCTGGTCT TTGCTTGGCA GAGATAGGTG AGATGATGAC 
    CAGGGAGTTC AGAGGGTTGG AGGAGGAACC GAGCAAGCTG GAGGTTGTCT 
    GCATGGAAGC TAGGAGAAAA TTAGCTGAGT GGGAACCATA CTCACCTGTC 
    ATCGAACAAG GGGAGGACAT GGATTTCCAA TTCTCACTGG ACATGTTAGG 
    AGAGTACAAT GATGTGATTA GGTCACCAAG ATTCAATGGC TTAGGAGCAA 
    AGGGGAATGG TTTCAGAAAC CCTCTTTCAA AGCTTGTGGA GAGCATCGAT 
    GAGGACAATG ATGATGATGA TGGCCGAAGT GAATCTTCCA AGCGTTCATC 
    GGAGCGTGTC CATTCTGGAG GGTTGAAGTT CCCCAGTGCT GATAAATCCA 
    GCGGTTCTAA CGGCAGTGTG CATGCTCTGA ACAGGAGTGC AGACGAACAG 
    CTTCCATCAA GTGTATACTT CGTCAGGCTG TCGGACATGA ATGCAGAAGA 
    GTGGAATATA TTCCTTGAGA AGTTCCAGGA GCTGCTGAAA GAAGCTCTGC 
    AGGAGCGTGC GGCGGCTGCA GGGCAGCGGA TGAAGCAGCG GCTGGGCACT 
    TCCTGCAAGT TTTGAGTAGG ACCATAGAGC AGCAGAGAAG AAAAATAATG 
    TAATGCTTGC TACTTGTGTT GCTTATTATG GAGTGAGTAC AGGAAGGGAT 
    ATATGCTCAT GTGAGAAATG CCTACAGCTT TGTGCAATGT TGCCATGTAA 
    ACTTGTTATG TTCAGGTAGA CAAGATCAGG ATGGTGATGG GTGTGGAGAA 
    GGGCTATTAT GCATGTTGAT TAACTATGTT AAACAGGTGC TTCTTAATAA 
    ATGCTTGTCA GCTTGTGTAT ATTGTGTTAG ATGCCAAATA TGTCAATGGT 
    GTTTTTCATA GCTGTTGGTG AACATTCTTT GTGCTGTGAG ATGTAAATAT 
    GCTCTCTTTT GATGT

    Gene models with high sequence identity

    1. AT2G03890.1 [+] show detail - phosphoinositide 4-kinase gamma 7
      E-value: 0; Score: 653.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 0.0002
    HMMPfam Phosphatidylinositol 3-/4-kinase, catalytic 1.5e-23
    HMMPfam Phosphatidylinositol 3-/4-kinase, catalytic 0.00000011
    HMMPanther gb def: T17H3.7 0.00062
    HMMPanther FAMILY NOT NAMED 0.00062
    superfamily Ubiquitin-like 0.0000027

    See the detailed result >

    AT2G03890.1

    Model type
    Protein coding
    Short Description
    phosphoinositide 4-kinase gamma 7
    Curator Summary
    Phosphoinositide kinase which undergo autophosphorylation and phosphorylate serine/threonine residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains.
    Computational Description
    phosphoinositide 4-kinase gamma 7 (PI4K GAMMA 7); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G13640.1); Has 652 Blast hits to 635 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 175; Fungi - 87; Plants - 284; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR