K12942

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12942

Determination of introduced cDNA(s)

J013002I02 - Rice Full-length cDNAs - Original: J013002I02

full reading [+] show sequence

GAAGCGAACC CAGCGGAATT CGTTGGGCAG CGGGTGCGGG AGCAGTAGAG 
GAGGAGAGGT AGATGGATTG AGCAATCAAG CCCTGCTCCG GCCGCCGCCG 
CCGCCGCCGC CGCTGCCGCC GGGCGATCCC CTTACCCTCG CTCTGTGCAC 
CCGCACCCCG CACTTACCCC CTCCATGGCG TGATCCGATG ATAGCAACGA 
GAGCGGTGCT TCCCCTCTCC CTGACGGCGT CGGCCTCCGG CCTGTACGGC 
GCGCGCACCA AGAAGAGGAG GAAGCTGCTG CTGCTGCCGC GGCTGCCATG 
TCGCCCAATC TGGAGAGCCA CATCAAGAGC CAGGTGCCGG CGCTGCTGCT 
GAGGCGCTTC TTCGGCGGGG CGGGGCGGCG GCGGGTGTTC GTGCAGACGG 
AGACTGGGTG CGTGCTGGGC ATGGACCTCG ACCGCAGCGA CAACGCGCAC 
ACGGTGAAGC GCCGGCTGCA GCTCGCGCTC AACGTGCCCA CCGGCGAGAC 
CTCGCTCACC TTCGGCGACC GCGTCCTGGA GAATGACCTC TCCTTCATCC 
GCCCGGACTC GCCGCTGCTG CTCACCCGCA ACAGCATCAA CCGGAGCTGC 
TCCACGCCCT GCCTCTGCCC GGTGTCCAAG GACTTCGAGC ACAAGGATCG 
CAGCGGCCTG GTCGAGATGC TCGGCTGCTC GATCAGCTGC GCCCGCGTGA 
AGCGCCTCGT CGACGACGTG GTCACCGCCA TCAGGAGCGG CGTGGATCGG 
GTCCCCATTG GCAGTGGGCT TGGTGGCTCC TACTACTACA GGAACATCTC 
CGGCGACAGG GTTGCCATCG TGAAGCCGAC GGATGAGGAG CCTTTTGCAC 
CCAACAACCC GAAGGGGTTC GTCGGGAGAG CGCTTGGGCA GCCGGGACTG 
AAGAAATCTG TCAGGGTGGG AGAGACAGGG TTCAGGGAGG TGGCGGCGTA 
CCTGTTGGAT CATGATAACT TCGCAAATGT TCCTCCGACG GCGTTGGTGG 
AGATCACACA CTCAATTTTC CATATCAATT GTCCGGTGAA CGGCGGCAGT 
CCAGCTCATG ATCAGAAGCA GCAGGTTTCC AGCAAGATCG CTTCGTTTCA 
GCAGTTCATC GCGCATGACT TCGATGCCAG TGATCATGGC ACGTCGAGCT 
TCCCGGTTGC TGCTGTTCAT AGGATCGGCA TACTGGATAT CAGAATTTTC 
AACACTGACA GGCATGCTGG TAATGTGCTG GTGAGGAAGC TTGATGGTGG 
CACCGGTCGC TTTGGTTGTC AGACGGAATT GTTTCCAATT GATCATGGCC 
TGTGCTTGCC AGAGAATTTG TAGGACCCTT ATTTCGAGTG GATCCACTGG 
GCTCAGTCAT CAATCCCATT CTCTGAAGAG GAGCTCGAGT ACATTAAGAA 
TCTTGATCCA ATGAGGGATG TGGCAATGCT GCGTAGGGAG CTTCCTATAA 
TCCGCGAGGC CTGCCTTCGT GTCCTGGTGC TGTGCACAAT CTTCCTTAAG 
GAGGCTGCTG CTTCTGGTCT TTGCTTGGCA GAGATAGGTG AGATGATGAC 
CAGGGAGTTC AGAGGGTTGG AGGAGGAACC GAGCAAGCTG GAGGTTGTCT 
GCATGGAAGC TAGGAGAAAA TTAGCTGAGT GGGAACCATA CTCACCTGTC 
ATCGAACAAG GGGAGGACAT GGATTTCCAA TTCTCACTGG ACATGTTAGG 
AGAGTACAAT GATGTGATTA GGTCACCAAG ATTCAATGGC TTAGGAGCAA 
AGGGGAATGG TTTCAGAAAC CCTCTTTCAA AGCTTGTGGA GAGCATCGAT 
GAGGACAATG ATGATGATGA TGGCCGAAGT GAATCTTCCA AGCGTTCATC 
GGAGCGTGTC CATTCTGGAG GGTTGAAGTT CCCCAGTGCT GATAAATCCA 
GCGGTTCTAA CGGCAGTGTG CATGCTCTGA ACAGGAGTGC AGACGAACAG 
CTTCCATCAA GTGTATACTT CGTCAGGCTG TCGGACATGA ATGCAGAAGA 
GTGGAATATA TTCCTTGAGA AGTTCCAGGA GCTGCTGAAA GAAGCTCTGC 
AGGAGCGTGC GGCGGCTGCA GGGCAGCGGA TGAAGCAGCG GCTGGGCACT 
TCCTGCAAGT TTTGAGTAGG ACCATAGAGC AGCAGAGAAG AAAAATAATG 
TAATGCTTGC TACTTGTGTT GCTTATTATG GAGTGAGTAC AGGAAGGGAT 
ATATGCTCAT GTGAGAAATG CCTACAGCTT TGTGCAATGT TGCCATGTAA 
ACTTGTTATG TTCAGGTAGA CAAGATCAGG ATGGTGATGG GTGTGGAGAA 
GGGCTATTAT GCATGTTGAT TAACTATGTT AAACAGGTGC TTCTTAATAA 
ATGCTTGTCA GCTTGTGTAT ATTGTGTTAG ATGCCAAATA TGTCAATGGT 
GTTTTTCATA GCTGTTGGTG AACATTCTTT GTGCTGTGAG ATGTAAATAT 
GCTCTCTTTT GATGT

Gene models with high sequence identity

AT2G03890.1 [+] show detail - phosphoinositide 4-kinase gamma 7
E-value: 0; Score: 653.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
Gene3D	no description	0.0002
HMMPfam	Phosphatidylinositol 3-/4-kinase, catalytic	1.5e-23
HMMPfam	Phosphatidylinositol 3-/4-kinase, catalytic	1.1e-07
HMMPanther	gb def: T17H3.7	0.00062
HMMPanther	FAMILY NOT NAMED	0.00062
superfamily	Ubiquitin-like	2.7e-06

See the detailed result >

AT2G03890.1

Model type: Protein coding
Short Description: phosphoinositide 4-kinase gamma 7
Curator Summary: Phosphoinositide kinase which undergo autophosphorylation and phosphorylate serine/threonine residues of protein substrates. Contains phosphoinositide 3/4-kinase and ubiquitin-like domains.
Computational Description: phosphoinositide 4-kinase gamma 7 (PI4K GAMMA 7); FUNCTIONS IN: inositol or phosphatidylinositol kinase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G13640.1); Has 652 Blast hits to 635 proteins in 176 species: Archae - 0; Bacteria - 6; Metazoa - 175; Fungi - 87; Plants - 284; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Link: InterPro Scan - TAIR