K12943

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12943

Determination of introduced cDNA(s)

J023012B21 - Rice Full-length cDNAs - Original: J023012B21

full reading [+] show sequence

GACTTCTCCT CAGCTCGCTT TCCCCTTCAC CACTGCAACT TGCTCATCAC 
CCACACACCA AGCAAGCACT CACTCTCTCT TGCTAGCTCT CTCCACCACA 
AGAAGAAACT AGCTAGCCAA GAAACGGAGG ATCGATCGAG GTTCAGGATA 
GAGATTATTA CATCGTCGTG GTCGTCGATC ATGGGGGATC ATCAGATGAT 
GCACGCAGCT CCGGCGGCGA TGTACAACGG CGGCGGTGGT ACGACGAGCT 
CTCATGGCGT GTGGTGGAGC AACGCGGTGG GGGTACCGGC GGCGGCGACG 
TGCTCGACGA CGACGGAGCT CGCCGGGTAC ACCGCCTGGT CGTCGGCTCT 
GGCCGCTGGA TACGATGGCA TGGTAGCTGA CAACGGCGGC AAGCAGGCGA 
AGAGCACCAC CACGGCGTCG TCGGAGTCGC CCGGCAACAA CAGCTCGGTG 
ACCTTCCAAG AGCCGGCGAG CATCCCCGAC CCGGCCGCCG TCGCCGCCGT 
GCCGCAGCCG GGGCTCGCCG GCTTCACCGA CTGGACCCAG CCTTTCATGA 
ACAACGGTGC TGGTCTGCAT GAGTTTCTGC AAGATGGCCA CCATGACATG 
AGCGCGTCGA GCTTGATGAA TCACTCATCA AATAACCTAG CACTGCAGCA 
AGCAGGTCAC CACCACGAGC TGCTGTCCAG CTTCGGCTCA GACCTGCTCT 
TGTCGCCGAC GTCGCCGTAC GGCGGATTCC AGTCCTCGCT GCTGAGGAGC 
CTCATGGAGC CGACGGCGAA GCAGCAGCAG CAGCAGCCGG CTTTGGCTGG 
ACTCCAGCAG TATCATCAGT ACCAGCAGCA GATGGGACAC GCACCAGCAG 
CTGCTGCCAA GTTCGCGCAG GCAGTTGGGG CCAGGGATTC ACTCCAGTTC 
ACCAACGACG CGCCGTTCTG GAACCCTTCT GCCGGATTCG GCATGCCGGC 
GGCTGTGGCG GTGGCGGCGG CGGCGGCGCA AGATCAAGCT AGCGTTCGCT 
CTGCCAAACG CTCGTCGCCG GCGCCGCCGC GTGCGGCAGC AACCCTTGCA 
TTAAAGACTG CTATGGAAGG AGTAGGGGAC TCTAGCTCAG TGATCACCAA 
GAAGGAGACA GCGTTCAAGA AACCGAGACT CGAGACACCG TCGCCATTGC 
CGACCTTCAA GGTTAGGAAG GAGAAGCTAG GGGACAGGAT CACAGCGCTC 
CAACAACTAG TCTCTCCTTT TGGAAAGACG GATACCGCAT CGGTGCTCCA 
TGAGACCATC GAGTACATCA AGTTCCTGCA CGACCAAGTT GGTGCTCTTA 
GTGCTCCATA CTTGAAGAAC GGTGCCCATC AAGTGCCCCA CTTGAAGAAC 
TCAAGTCCTG ACAAGTCCGA GCACGGCGAG ATATCACTGA AGGGCCGGGG 
GCTTTGTCTG GTGCCGATAT CGAGCACGTT CGCCGTTGCC AGCGAGGTGC 
CCGTCGAGCT GTGGACTCCA TTTGGTGCCA ACTTTATTAG GTAGAAGAAC 
AAGTCCTGGA ACTGAAGAAC ACTGATCAGA AGCGTCAAAT TAACGATCGA 
GTAGCTAGCT GCTAATATAG TCGCCTAGCT AGCACAAATC GAGATCTGAT 
GTTTCTTGAT TGTATCTACG TACTAGTTGT ATGATGATAA TTTCGTAACC 
CTAGTAGTAC TGATGCTGTG GCTGTAATCA GCAAAGCACT GAGCTAGTTA 
GCTAGATGAA CCTTTGGAAT GAGTGCTTGA AGACTTGGAT TCATTCTTCA 
GGTTCATCAC AGAATAAGGA ATCGGCTAGT TGAGAGGGGA CAGAATTATG 
TACTGATCAT CATCAGGTTC TTATGATTGG TTGCTAGGTT GCATCGTATC 
AATGAGTAGT TGCGGAAGAA TTTGTTATAG AATTGATGGT TCGATTCAAT 
GGTGGATCAA TTAAGTAATG TAGCAGGTTT CTCTCTGTTG ATTGTACC

Gene models with high sequence identity

AT1G61660.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
E-value: 8e-40; Score: 162.00

InterPro Scan Digest

See the detailed result >

AT1G61660.3

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1).
Link: InterPro Scan - TAIR