K12949

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12949

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12949

Determination of introduced cDNA(s)

  • J033071P12 - Rice Full-length cDNAs - Original: J033071P12

    full reading [+] show sequence

    Nucleotide sequence: J033071P12 - full reading 
    GACTCCCACC CCCCGCCGCC GCCGCCACCA CCGCAGCTGC GCCGCTTCAA 
    GGCAGGACAT TGTGAAAGTT TCCCAAGTCT GAAAAGATGG TTCTGAAGAC 
    TGAACTTTGC CGTTTTAGTG GGCAGAAGAT ATACCCAGGC AAGGGTATCA 
    GGTTCATTCG TGCTGATTCC CAGGTTTTTC TGTTTGCCAA CTCGAAATGC 
    AAGCGCTACT TCCACAACCG CCTGAAGCCT GCCAAGCTTA CCTGGACAGC 
    TATGTACAGG AAGCAGCACA AGAAGGACAT TCATGCTGAA GCTGTCAAGA 
    AGAGGCGTCG CACCACCAAG AAGCCATACT CACGGTCAAT TGTTGGTGCT 
    ACACTGGAAG TTATCCAAAA GAAGAGGAGT GAGAAACCTG AAGTCCGTGA 
    TGCAGCCAGA GAAGCGGCTC TCCGTGAGAT CAAGGAGCGC ATCAAGAAAA 
    CCAAGGATGA GAAAAAGGCA AAGAAGGCAG AGGTGGCAAA ATCTCAGAAG 
    ACACAGTCGA AGGGTGGTGC TACCCAGAGG GGTGCTAAAG GTCCTAAGAT 
    TGGCGGCGGT GGTGGGAAGC GCTGAAAGTC TCTTGCATCA TAGGGAGAGT 
    TCTTCTGGCT TAGCCTTCTC TCCGGCCATA TCGTAGAAAC AGTACCTTGG 
    TCAAGTTAGC CTGCCGTCTT GAATTTTCAC CTTTTTCTGT GAGATGACTT 
    GTCCTGAATG CTTCGGGTAT TTTGTTAGTC AATTTACAAT TGCACTTATG 
    TTTGGCTATT ATAAAATTAT CAAGTTTTCT GCATTGACAA TTGCGCAGTG 
    AGTTTGATGG CCTTAATTTA TTTGCCATCT GTTTTGATGT TTC

    Gene models with high sequence identity

    1. AT3G53020.1 [+] show detail - Ribosomal protein L24e family protein
      E-value: 4e-55; Score: 211.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S RIBOSOMAL PROTEIN L24 2.9e-71
    HMMPanther Ribosomal protein L24e 2.9e-71
    superfamily Glucocorticoid receptor-like (DNA-binding dom 7.4e-18
    Coil coiled-coil 0
    HMMSmart TRASH 0.00028
    HMMPfam Ribosomal protein L24e 2.5e-36
    PatternScan Ribosomal protein L24e 0
    Gene3D Ribosomal protein L24e 2.7e-20

    See the detailed result >

    AT3G53020.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L24e family protein
    Curator Summary
    RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.
    Computational Description
    SHORT VALVE1 (STV1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: auxin mediated signaling pathway, gynoecium development, translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: ribosomal protein L24 (TAIR:AT2G36620.1); Has 1463 Blast hits to 1456 proteins in 346 species: Archae - 110; Bacteria - 20; Metazoa - 460; Fungi - 300; Plants - 340; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR