K12950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K12950

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K12950

Determination of introduced cDNA(s)

  • J023101G03 - Rice Full-length cDNAs - Original: J023101G03

    full reading [+] show sequence

    Nucleotide sequence: J023101G03 - full reading 
    GGCGTGAGGT GCTCCTCCTC GGCTCGTTGG TGGTTCTCGC CTTGTTGTCG 
    CTGTTCCCGT GCTGCTCCTG TCTCTCGCAG GGAGCGGAGG AGGAGGAGGA 
    CGACGGCGAG GTGCGCTTGA TGGGGCTCGC CGGAGAGGCC GCTGGCTCGC 
    CTGGCAGTGG CGGCGGGTTC AGTGCAAATG GTAAATTTAG CTATGGTTAT 
    GCGAGCTCTC CTGGAAAAAG ATCCTCCATG GAGGACTTCT ATGACACCAG 
    AATTGATGGT GTCGATGGAG AGACCGTTGG ACTGTTTGGT GTCTTTGATG 
    GTCATGGTGG AGCTCGAGCA GCAGAATTCG TCAAGCAGAA CCTCTTCACC 
    AATTTAATCA AGCACCCAAA GTTATTCAGT GATACCAAGT CTGCAATTGC 
    TGAAACTTAC ACTAGCACGG ACTCTGAACT TCTGAAAGCT GAAACCAGCC 
    ACAATCGAGA TGCAGGGTCG ACTGCCTCCA CTGCAATTCT CGTAGGCGAC 
    CGTCTGCTCG TTGCAAATGT TGGAGATTCT AGGGCTGTCA TTTGTAGAGG 
    AGGAGATGCT ATAGCTGTGT CAAGAGACCA CAAGCCTGAT CAGTCAGACG 
    AGAGGCAGAG GATAGAGGAT GCTGGTGGTT TTGTGATGTG GGCTGGAACA 
    TGGCGCGTGG GTGGTGTTCT TGCTGTCTCT CGAGCATTTG GTGACAAACT 
    CCTGAAGCAA TATGTGGTTG CTGATCCAGA GATCAAGGAG GAGGTGGTCG 
    ACAGCTCTCT CGAGTTCCTC ATCCTTGCTA GTGATGGCCT CTGGGACGTG 
    GTGACCAACG AGGAAGCTGT GGCCATGGTG AAGCCAATTC TGGATTCAGA 
    GCAGGCTGCA AAGAAGCTCC TCCAGGAGGC CTCACAGAGG GGAAGCGCAG 
    ACAACATCAC CTGCCTCGTC GTCCGTTTCT TGGAGCAGGA GAATCACCTG 
    CCAGAGAGAC CGACGAATGA TCAAGCCTCC TAACATATCA ATCATAGCTC 
    TCTTCCATAC ACACCGTTCT TCATTGCTCT TGCAAGTTTC TTCGACCTTA 
    TGGTTGTCTT GTGCCAAGCA GATGATGCAT CTGTCATAAG TGTCATCTGT 
    GGATGCTGCT GTAGCTGAAC ATTGTAACTT GTCGGGGGAT GTGTTTTTTG 
    CCATCTCCTT CGTTGCTTGC GTTGCCCTGA TCTTGTTTGA GGGCAACTTG 
    CAATCGCAGG TTAAGTGTTG GTCCTCAATC ATATGATGTA GCTTTCTACT 
    AAACTTGATG TAATGATATG TGTGCCATTC TAG

    Gene models with high sequence identity

    1. AT4G31750.1 [+] show detail - HOPW1-1-interacting 2
      E-value: 1e-119; Score: 426.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 1.3e-129
    HMMPanther Protein phosphatase 2C 1.3e-129
    HMMSmart Protein phosphatase 2C-related 8e-92
    HMMSmart Protein phosphatase 2C-related 0.005
    Gene3D Protein phosphatase 2C-related 3.6e-78
    superfamily Protein phosphatase 2C-related 1.7e-79
    HMMPfam Protein phosphatase 2C, N-terminal 1.5e-67

    See the detailed result >

    AT4G31750.1

    Model type
    Protein coding
    Short Description
    HOPW1-1-interacting 2
    Curator Summary
    Encodes HopW1-1-Interacting protein 2 (WIN2). Interacts with the P. syringae effector HopW1-1. WIN2 has protein phosphatase activity. Modulates plant defenses against bacteria. Three WIN proteins are identified so far (WIN1: AT1G80600; WIN2: AT4G31750; WIN3: AT5G13320).
    Computational Description
    HOPW1-1-interacting 2 (WIN2); FUNCTIONS IN: protein serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, defense response to bacterium; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G24940.1); Has 8917 Blast hits to 8860 proteins in 1196 species: Archae - 18; Bacteria - 2164; Metazoa - 1691; Fungi - 821; Plants - 2764; Viruses - 9; Other Eukaryotes - 1450 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR