K13004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13004

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13004

Determination of introduced cDNA(s)

  • J013034H02 - Rice Full-length cDNAs - Original: J013034H02

    full reading [+] show sequence

    Nucleotide sequence: J013034H02 - full reading 
    CCGCATCCCC CCACCGATTT CGTCCCCTCC GGCGGCGGCG GCGGCGGCGG 
    CGCACGGCTT CTCCGGGAGC TCTACGCGAC AAAACAATGA GGAGGTACAG 
    CCCACCATAT CGCAGTCCCC CTAGGAGGGG CTATGGTGGC AGAGGAAGAA 
    GTCCCCCTAG GAGGGGATAT GGAGGACGGA GGGAGCAGGG TTCTGGAAGT 
    CTCTTGGTCC GCAACATCCC ATTAAGCTGC AGAGGGGAGG ATCTTCGAGT 
    TCCTTTTGAA AGGTTTGGTC CTGTTCGGGA TGTTTACCTG CCAAAGGATT 
    ATTACAGCGG GGAACCACGG GGATTTGCAT TTGTGGAGTT CGTTGACCCT 
    TATGATGCCT CTGAGGCTCA ATATCACATG AATCGCCAGG TGTTTTTCGG 
    CCGGGAGATA ACTGTTGTTC TTGCTGCTGA GTCGCGGAAA AGGCCAGAGG 
    AAATGCGCAG TAGAGCTAGA GTCAGGGGTT ACTCTGGAAA CGAAGGGCGC 
    CGCTCTTCAT ATTATGGGAG GTCTCGTTCC CGTTCTCGCT CTCCCCACTA 
    TCGAGGTCGT CCACGGTCAA GGTCATACTC TCCTGCTCCA AGACGGCGAG 
    ATGACTACTC AGCTTCCCCA CCGAGAAAGG ATACGCACCC CACAAAATCT 
    CCTAGGCGTC AGCCAAAAGA ACATGATGAA GAGAAGAAGC GGAGATCCTA 
    CTCTCCTGCA AGTAGAGATG GCGACCCTCG CGATGCTGAT AACGGTTATG 
    AGAAGAGGTC GCCCCCACCT GACAGCGATG GATCCCCTCC ACACCGGAGG 
    TCTCCTAGGC ACTCCTCAGG GTCGCCTCCA GGATCCCGCT CTAGGTCCGC 
    CGATGTTTCC CCTGCCCGCA GCGACTGACA GAACTTTGAA CCAACGAAAT 
    GGGATAGCTG CATGATCTCC ACAGCACCTC CAATTCTAGT CAGTCTCCAT 
    CTTCCTTCCT GGTCCAACCA AGCTGTTTCA ATTAAACCGA AGCCCTAAGC 
    GGCGTGTTGT ATTATTGCTA AGTGTGCTTG CCATGAGTTT GGTATGGCAC 
    ATCGCCTGTT TGTGTGCTCA TATGTTGGGA GTCCAGGATG TTGTAGTCTT 
    TTGAGAGCTG CTTTGTTTGG TGGTCATTTG CTTTTTGCTG AACATTAACT 
    TGAAACAATG TGACATTGGT GTTGTGTACT ACCACTAGTG AGCCTTGAAC 
    TGGGTAACCG CCTATTTCCA CATCTATCTA TGCTTGTGAG TGCTTAGCCC

    Gene models with high sequence identity

    1. AT3G55460.1 [+] show detail - SC35-like splicing factor 30
      E-value: 4e-37; Score: 152.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 16.364
    HMMSmart RNA recognition motif, RNP-1 2.2e-19
    Gene3D Nucleotide-binding, alpha-beta plait 1.6e-23
    HMMPfam RNA recognition motif, RNP-1 4.7e-16
    superfamily RNA-binding domain, RBD 1.7e-23
    HMMPanther SERINE/ARGININE RICH SPLICING FACTOR 1e-57

    See the detailed result >

    AT3G55460.1

    Model type
    Protein coding
    Short Description
    SC35-like splicing factor 30
    Curator Summary
    encodes an SC35-like splicing factor that is localized to nuclear specks.
    Computational Description
    SC35-like splicing factor 30 (SCL30); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: response to oxidative stress, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1); Has 999798 Blast hits to 999477 proteins in 36048 species: Archae - 21842; Bacteria - 604317; Metazoa - 201442; Fungi - 24075; Plants - 55248; Viruses - 69771; Other Eukaryotes - 23103 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR