K13005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13005

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13005

Determination of introduced cDNA(s)

  • J023108B15 - Rice Full-length cDNAs - Original: J023108B15

    full reading [+] show sequence

    Nucleotide sequence: J023108B15 - full reading 
    GGTCTCTCTT CCCCTTCCAC GCCACCTCTC CCCTTCCCAC AGTCCCACGT 
    CGTCGCCGGC GACACGCAGA CGAACGCGCC CGGCAAACCA TGGCGGCGCG 
    ATCCGGACCA CCAGCCGCGG CCGTCGACCC CGAGGCCGTG CTCTCCCACA 
    GCTTCCCCGA GGTCTCCTTC GCCTACGACG AGAGGGATGT GGCGCTGTAC 
    GCGCTCGGAG TCGGGGCGTG CGGCGCGGAC GCCATCGACG AGAAGGAGCT 
    GCACCTGGTG TACCACAGGG ACGGCCAGCC ACACATCAAG GCTCTTCCTA 
    CTTTTGCTTC TTTATTTCCT TTCAAGAACA GCAATGGGCT TGGAATTGTT 
    GATGTGCCTG GCCTTAACTT TGACGCAAGC CTTCTATTGC ATGGTCAACA 
    TTACATAGAG ATATACAAGC CAATTCATTC GCGTGCCAAT GTTGTAAACA 
    AGACCAAGAT AGCTGGCTTG CATGACAAAG GGAAAGCAAC TATTCTTGAG 
    ATTGAGACTA CAACCCATGT CAAAGATTCT GGTGAAGTTT TATGTATGAA 
    CAGGAGTACT ATCTACCTGC GTGGTGCTGG AGGCTTTTCT GATCCTTCAC 
    GACCATACTC CTATGCTAGT TATCCCACTA ACCAGGTTTC TCGCATTTCT 
    ATTCCAAATT CAGCGCCTTC TGCAGTATAT GAAGACCAGA CACAACAATC 
    CCAGGCACTA TTGTACAGGT TATCTGGGGA CTATAATCCT TTGCATTCAG 
    ACCCTATGGT TGCGCAGGTT GCAGGGTTCA CTCGTCCAAT ACTGCATGGT 
    CTCAGTTCCC TTGGATTCGC GATCCGCGCT GTCATCAAAT CTTTCTGCAA 
    TGGAGATCCA ACAGCAGTGA AAAGCATCTT TGGCCGTTTT CTTCTGCATG 
    TCTATCCTGG AGAAACTTTA GTCACTGAAA TGTGGCTCCA AGGCCAGAGG 
    GTGCTTTATC AAACAAAGGT CAAGGAACGC AACCGCGCCG TGCTTTCTGG 
    ATATGTGTTG CTCAAACACA TCCCCTCATC ATTGTAAGTG CTGTATCATA 
    TTCTTGACTG GATATTTTAT AAATTGGTGC CTGCCTGCTT GTATTAGTTT 
    GGTAGTGTGT AGTGGTCAGA AAAGCTAAAG CTTTCCGGGG ACATAAAATC 
    AGGTAAATGA AGAGCTTCAG CTACCGCAAG TGGTGGGTTG CCATTGTAAT 
    GATAACAAGT GCTCTGCACC TATCTTCAAA TGATACATTG CCTAATTTCT 
    CTTCTG

    Gene models with high sequence identity

    1. AT1G76150.1 [+] show detail - enoyl-CoA hydratase 2
      E-value: 6e-109; Score: 391.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.9e-36
    Gene3D no description 6.9e-37
    superfamily Thioesterase/thiol ester dehydrase-isomerase 2.6e-33
    superfamily Thioesterase/thiol ester dehydrase-isomerase 3.7e-25
    HMMPfam MaoC-like dehydratase 1.4e-22

    See the detailed result >

    AT1G76150.1

    Model type
    Protein coding
    Short Description
    enoyl-CoA hydratase 2
    Curator Summary
    Encodes a monofunctional enoyl-CoA hydratase 2, involved in the degradation of even cis-unsaturated fatty acids, gene expression is enhanced during the first 2 days of germination, as well as in senescent leaves.
    Computational Description
    enoyl-CoA hydratase 2 (ECH2); FUNCTIONS IN: oxidoreductase activity, 3R-hydroxyacyl-CoA dehydratase activity; INVOLVED IN: fatty acid beta-oxidation, unsaturated, even number, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MaoC-like dehydratase (InterPro:IPR002539), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); Has 2242 Blast hits to 2242 proteins in 541 species: Archae - 23; Bacteria - 1245; Metazoa - 172; Fungi - 395; Plants - 47; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR