K13010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13010

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K13010

Determination of introduced cDNA(s)

  • J023012E10 - Rice Full-length cDNAs - Original: J023012E10

    full reading [+] show sequence

    Nucleotide sequence: J023012E10 - full reading
    GACTTCACTA GGCGAGAAAG AGATTATCAC TGTTGTTTTT TTCGTTTTCT 
    TGCTTGCGGC AAGCAAAGCA AAGCTAAGCT AAGCCAGCCG AACAATGGAG
    AAGGCCGCTG GATTCCTCTC CTCCCTCCTC GGCGGCGGCG AGGAGGTGCC
    GCCAGAGCCG GCGGCGACGG TGAGGTCGAT CCTGATATAC CCCATCAAGT
    CATGCAGGGG AATCTCCGTG CCCCAGGCCC CAATCACCTC CACTGGGTTC
    CGGTGGGATC GGCAGTGGGT GGTGGTGAAC TCCAAGGGGA GGGCCTACAC
    GCAGAGGGTG GAGCCCAAGC TCGCGCTGGT GGAGGTGGAG ATGCCGCCGG
    AGGCATTCGC CGAGGAGTGG CGGCCGACCG CCGATTCCTA CTTGGTTGGA
    AGAGCACCTG GAATGGACCC ATTGAAGATC CCTCTCAGTG CTGAACAAGC
    CATAATTAAT GATGTCTCTG TATGGGAGTG GTCTGGTTCT GCTTATGATG
    AAGGAGCTGA GGCGGCCGAG TGGTTTTCCA GTTACTTCGG GAACCCAAGT
    CGTCTAGTGC GTTTCAAAGA AGGGTCGGAA ATCAGACCAA CTAATCCTGA
    CTATGCTCAA GGCTACAAAA TTATGTTTAC AGATTGCTTC CCGTTTCTGA
    TGGCCTCCCA GGGTTCATTG GATGCACTAA ATGAGGTTCT GAAAGAACCT
    GTACCGATGA ACCGCTTCAG GCCAAACATT TTGGTGGATG GATGCCACCC
    ATACTCAGAG GATCTATGGA AAACCATAAA AATAAACAAG TTAACATTTC
    AGGGTGTCAA GTTATGCAAC CGCTGCAAGG TGCCTACCAT TAACCAAGAA
    AATGGGATAC TTGGCACTGA ACCAACAGAA ACTCTACTGA CATTCCGGTC
    CGATGAAGTT CTACGTCCAA GCCACAAAAA CAAACGGCAG GTCTACTTTG
    GGCAAAATTT AGTCTGCAAG GAATCTCTGT CTGCAAAGGG CAAAGGAAGG
    ATCATCAAGG TCAGCGATCC GGTTTATGTT CTTGAGAGAT TCCCTTCTTC
    CGATGAAGCT CCAGCATGAG CAAAGGACAT ACTGGCAGCT GTTCAGAGAC
    CTAGTAGTAC TGTAGAATGC TGAATTTCTC GGCATCATTG TAAATTTTAT
    GCTGCAACAA GGCTTGAGAA AATGTGTTTT ATTATGTGGC AGAATAAACA
    GTACCATCTG GCACTGAAAA CTGTTGCTCA TACAATTGAT ATTCAGTGAT
    CATAGTTATT CCTAATATAG C

    Gene models with high sequence identity

    1. AT5G44720.1 [+] show detail - Molybdenum cofactor sulfurase family protein
      E-value: 1e-108; Score: 390.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Molybdenum cofactor sulfurase, C-terminal 31.811
    superfamily Pyruvate kinase, beta-barrel-like 1.9e-08
    HMMPanther MOLYBDOPTERIN COFACTOR SULFURASE (MOSC) 2.8e-70
    HMMPfam MOSC, N-terminal beta barrel 4.2e-37
    HMMPfam Molybdenum cofactor sulfurase, C-terminal 4.8e-23

    See the detailed result >

    AT5G44720.1

    Model type
    Protein coding
    Short Description
    Molybdenum cofactor sulfurase family protein
    Computational Description
    Molybdenum cofactor sulfurase family protein; FUNCTIONS IN: molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), MOSC, N-terminal beta barrel (InterPro:IPR005303), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302); BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 1899 Blast hits to 1878 proteins in 681 species: Archae - 4; Bacteria - 1056; Metazoa - 332; Fungi - 289; Plants - 100; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR