K13010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13010

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K13010

Determination of introduced cDNA(s)

  • J023012E10 - Rice Full-length cDNAs - Original: J023012E10

    full reading [+] show sequence

    Nucleotide sequence: J023012E10 - full reading 
    GACTTCACTA GGCGAGAAAG AGATTATCAC TGTTGTTTTT TTCGTTTTCT 
    TGCTTGCGGC AAGCAAAGCA AAGCTAAGCT AAGCCAGCCG AACAATGGAG 
    AAGGCCGCTG GATTCCTCTC CTCCCTCCTC GGCGGCGGCG AGGAGGTGCC 
    GCCAGAGCCG GCGGCGACGG TGAGGTCGAT CCTGATATAC CCCATCAAGT 
    CATGCAGGGG AATCTCCGTG CCCCAGGCCC CAATCACCTC CACTGGGTTC 
    CGGTGGGATC GGCAGTGGGT GGTGGTGAAC TCCAAGGGGA GGGCCTACAC 
    GCAGAGGGTG GAGCCCAAGC TCGCGCTGGT GGAGGTGGAG ATGCCGCCGG 
    AGGCATTCGC CGAGGAGTGG CGGCCGACCG CCGATTCCTA CTTGGTTGGA 
    AGAGCACCTG GAATGGACCC ATTGAAGATC CCTCTCAGTG CTGAACAAGC 
    CATAATTAAT GATGTCTCTG TATGGGAGTG GTCTGGTTCT GCTTATGATG 
    AAGGAGCTGA GGCGGCCGAG TGGTTTTCCA GTTACTTCGG GAACCCAAGT 
    CGTCTAGTGC GTTTCAAAGA AGGGTCGGAA ATCAGACCAA CTAATCCTGA 
    CTATGCTCAA GGCTACAAAA TTATGTTTAC AGATTGCTTC CCGTTTCTGA 
    TGGCCTCCCA GGGTTCATTG GATGCACTAA ATGAGGTTCT GAAAGAACCT 
    GTACCGATGA ACCGCTTCAG GCCAAACATT TTGGTGGATG GATGCCACCC 
    ATACTCAGAG GATCTATGGA AAACCATAAA AATAAACAAG TTAACATTTC 
    AGGGTGTCAA GTTATGCAAC CGCTGCAAGG TGCCTACCAT TAACCAAGAA 
    AATGGGATAC TTGGCACTGA ACCAACAGAA ACTCTACTGA CATTCCGGTC 
    CGATGAAGTT CTACGTCCAA GCCACAAAAA CAAACGGCAG GTCTACTTTG 
    GGCAAAATTT AGTCTGCAAG GAATCTCTGT CTGCAAAGGG CAAAGGAAGG 
    ATCATCAAGG TCAGCGATCC GGTTTATGTT CTTGAGAGAT TCCCTTCTTC 
    CGATGAAGCT CCAGCATGAG CAAAGGACAT ACTGGCAGCT GTTCAGAGAC 
    CTAGTAGTAC TGTAGAATGC TGAATTTCTC GGCATCATTG TAAATTTTAT 
    GCTGCAACAA GGCTTGAGAA AATGTGTTTT ATTATGTGGC AGAATAAACA 
    GTACCATCTG GCACTGAAAA CTGTTGCTCA TACAATTGAT ATTCAGTGAT 
    CATAGTTATT CCTAATATAG C

    Gene models with high sequence identity

    1. AT5G44720.1 [+] show detail - Molybdenum cofactor sulfurase family protein
      E-value: 1e-108; Score: 390.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Molybdenum cofactor sulfurase, C-terminal 31.811
    superfamily Pyruvate kinase, beta-barrel-like 1.9e-08
    HMMPanther MOLYBDOPTERIN COFACTOR SULFURASE (MOSC) 2.8e-70
    HMMPfam MOSC, N-terminal beta barrel 4.2e-37
    HMMPfam Molybdenum cofactor sulfurase, C-terminal 4.8e-23

    See the detailed result >

    AT5G44720.1

    Model type
    Protein coding
    Short Description
    Molybdenum cofactor sulfurase family protein
    Computational Description
    Molybdenum cofactor sulfurase family protein; FUNCTIONS IN: molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), MOSC, N-terminal beta barrel (InterPro:IPR005303), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302); BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 1899 Blast hits to 1878 proteins in 681 species: Archae - 4; Bacteria - 1056; Metazoa - 332; Fungi - 289; Plants - 100; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR