K13012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13012

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13012

Determination of introduced cDNA(s)

J033125M22 - Rice Full-length cDNAs - Original: J033125M22

full reading [+] show sequence

GAGGAGAACG AGAGAAAACG CACCGTTGGC CGCGTATCAG GGATTCGGGG 
CATCAAGGTC CAATAGCTGA ATAGCACATC GCCATCACAA TGCCAGCGCC 
TCTCCCAGGT GTCGGAACCG GAGAGAGGGA GAGATAGAGA GACCTGGAAG 
GCTGGAAATC GAGAGCAGCG AGGCGGCGAA ACAAGCAGGC GGCCCGGCTC 
TCAGTCTCAT CCCGTGCCTC CTCCGCCTCC CTAATCGTCA ACCATCTAGA 
TGTCTCAGTC GGTGCAAGGG TCTTTTTGTT AGTTACTTTG CAAAGTTAAA 
CTTGAAAATT TAAAGGATAA AAAAATGTCC AGGACTGCAA TAATTTTGCA 
TCGATTTCGT CAAGCAGCTG CCAGTCAGAG CCTCGTAGAG ACTTCTCTTC 
AGTCATGCCC ATATTTTGGT GTTCCTCTGA GATGGTTAAG CTGCACAGAG 
CAAACTTCAA AATGGGAAAC TTCTACATCT TATCAGATTG ATGACGTAGA 
TCAATATTCA CCAATTAGTA GTGTAGCAAA AATCTGCACA CATCCCCTTT 
CATCTCACGT AAACCACTGT TATCACCACA GTCGTTCACT GGGTTTCTCA 
AGTGTCTCAA GTTCTCGTCG CATGTATTCC TCTGATGCTA GAGCCAAGCC 
AGAAGATTAC AAAAATGCTA TGGCCAAAGT TTCTTCTACA GAAACTTCTG 
AAGTCGGCGC CACAGATCAC AGTGGCAACA CTTGGATTGA TATTTTAGAT 
AGTGCCCGTC ACTCTACCAT AGATGCTACT GCAGCCGCAC TTAAGAAACT 
GAAGGCGATG ACTGATCCAA TTGTACCTTG CATCCAGGAG TTATATGCTA 
CCTATCCAGA TCTACAGAGG ATGGTCATCC CACTTGGTGG GACACTGATG 
GGTACAGCAG TTGCATGGTT TGTGATGCCT ATTGTTCTAA GGAAGCTCCA 
CAAGTACACT TCAGAAAATC CTCTCATAAC GCTTGAAGGG GAGTCAACTA 
AGAAATACAT GTCCTATCAA ACAAGCTTGT GGAGTGCATT GGAAGATCCT 
GCAAAATGTA TTATCACTTT TATGGCATTT TCACAGATGG CTGCAATTGT 
TGTGCCAAGT ATTTCAGTTT ATCTTCCACA GGCATGGAGA GGAACATTTG 
TTGTATCTCT TCTGTGGTTT CTTCAGAAGT GGAAAACTAA CTTCATTGCT 
AATATTATGA CCAATCAATC TGCTATAGGG ATGGACAGAG ACAGATTGTT 
AACATTTGAT AAGGTGTCAT CGTTAGCACT AATTGCACTT GGAGGAATGG 
CTCTTGCTGA AGCTTGCGGT GTACCTGTGC AGTCAATATT GACTGTTGGT 
GGTGTCGGAG GTGTTGCTAC TGCTTTTGCT GCTAGAGATG TCTTAGGTAA 
CATACTGAGT GGGCTCTCTC TACAATTTTC AAAGCCATTC TTGGTTGGGG 
ATAACATAAA GGCTGGGTCA ATAGAAGGAA AAGTTATTGA AATTGGACTG 
ACATCCACGT TATTGATTAA CCCAGAAAAC CTCCCTGTTG TAGTTCCTAA 
CTCACTGTTC TCCAGCCAAA TTATAGTCAA TAAATCAAGA GCTGTGTGGC 
GTGCTAGGGT GGTAAAAATT CCTGTTATAA TTGAAGACCT TGAAAAGATT 
CCTACTATAT CAGAGGAGAT AAAAGTGAAG TTAAGGTCCA ACCCAAACAT 
TGATGCTCCT TACTGCTATC TCTCACGGTT AGAAAGTTCA CATGGAGAGC 
TTACCATTGG TTGCAACATC AAAAGCATGA GAAGAGACGA ATGGACAACA 
GTGGAACAAG ATATTCTTTT GAAAGCTGCC AGCATTGTCA AGCAATACGA 
ATCTTGAACT TGCGAGCACA TTACAGTTCT GTTCTATCCC TCTCCATTTT 
ACTGCGAGAA GAGGTTAAAG TGGTTACTCT TTTTCTAGTT TGGTATGGGT 
ATATGGGACT GTAAATAGAG TTCTCATGTC CCATACTCTA ATGTTTTGAT 
CACATGTGCC ATATGCCTTT CCTATTTAAG GAAGTGACCC TTTGTCATCC 
TACTGTTACA TGGATACAAG AAAAGGAGAT GAAAGATGAA TCACC

Gene models with high sequence identity

AT4G00290.1 [+] show detail - Mechanosensitive ion channel protein
E-value: 5e-91; Score: 332.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
superfamily	Like-Sm ribonucleoprotein (LSM)-related domain	6e-18
superfamily	Mechanosensitive ion channel MscS, transmembrane-2	3e-11
HMMPfam	Mechanosensitive ion channel MscS	5.6e-33

See the detailed result >

AT4G00290.1

Model type: Protein coding
Short Description: Mechanosensitive ion channel protein
Computational Description: Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR