K13012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13012

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13012

Determination of introduced cDNA(s)

  • J033125M22 - Rice Full-length cDNAs - Original: J033125M22

    full reading [+] show sequence

    Nucleotide sequence: J033125M22 - full reading
    GAGGAGAACG AGAGAAAACG CACCGTTGGC CGCGTATCAG GGATTCGGGG 
    CATCAAGGTC CAATAGCTGA ATAGCACATC GCCATCACAA TGCCAGCGCC
    TCTCCCAGGT GTCGGAACCG GAGAGAGGGA GAGATAGAGA GACCTGGAAG
    GCTGGAAATC GAGAGCAGCG AGGCGGCGAA ACAAGCAGGC GGCCCGGCTC
    TCAGTCTCAT CCCGTGCCTC CTCCGCCTCC CTAATCGTCA ACCATCTAGA
    TGTCTCAGTC GGTGCAAGGG TCTTTTTGTT AGTTACTTTG CAAAGTTAAA
    CTTGAAAATT TAAAGGATAA AAAAATGTCC AGGACTGCAA TAATTTTGCA
    TCGATTTCGT CAAGCAGCTG CCAGTCAGAG CCTCGTAGAG ACTTCTCTTC
    AGTCATGCCC ATATTTTGGT GTTCCTCTGA GATGGTTAAG CTGCACAGAG
    CAAACTTCAA AATGGGAAAC TTCTACATCT TATCAGATTG ATGACGTAGA
    TCAATATTCA CCAATTAGTA GTGTAGCAAA AATCTGCACA CATCCCCTTT
    CATCTCACGT AAACCACTGT TATCACCACA GTCGTTCACT GGGTTTCTCA
    AGTGTCTCAA GTTCTCGTCG CATGTATTCC TCTGATGCTA GAGCCAAGCC
    AGAAGATTAC AAAAATGCTA TGGCCAAAGT TTCTTCTACA GAAACTTCTG
    AAGTCGGCGC CACAGATCAC AGTGGCAACA CTTGGATTGA TATTTTAGAT
    AGTGCCCGTC ACTCTACCAT AGATGCTACT GCAGCCGCAC TTAAGAAACT
    GAAGGCGATG ACTGATCCAA TTGTACCTTG CATCCAGGAG TTATATGCTA
    CCTATCCAGA TCTACAGAGG ATGGTCATCC CACTTGGTGG GACACTGATG
    GGTACAGCAG TTGCATGGTT TGTGATGCCT ATTGTTCTAA GGAAGCTCCA
    CAAGTACACT TCAGAAAATC CTCTCATAAC GCTTGAAGGG GAGTCAACTA
    AGAAATACAT GTCCTATCAA ACAAGCTTGT GGAGTGCATT GGAAGATCCT
    GCAAAATGTA TTATCACTTT TATGGCATTT TCACAGATGG CTGCAATTGT
    TGTGCCAAGT ATTTCAGTTT ATCTTCCACA GGCATGGAGA GGAACATTTG
    TTGTATCTCT TCTGTGGTTT CTTCAGAAGT GGAAAACTAA CTTCATTGCT
    AATATTATGA CCAATCAATC TGCTATAGGG ATGGACAGAG ACAGATTGTT
    AACATTTGAT AAGGTGTCAT CGTTAGCACT AATTGCACTT GGAGGAATGG
    CTCTTGCTGA AGCTTGCGGT GTACCTGTGC AGTCAATATT GACTGTTGGT
    GGTGTCGGAG GTGTTGCTAC TGCTTTTGCT GCTAGAGATG TCTTAGGTAA
    CATACTGAGT GGGCTCTCTC TACAATTTTC AAAGCCATTC TTGGTTGGGG
    ATAACATAAA GGCTGGGTCA ATAGAAGGAA AAGTTATTGA AATTGGACTG
    ACATCCACGT TATTGATTAA CCCAGAAAAC CTCCCTGTTG TAGTTCCTAA
    CTCACTGTTC TCCAGCCAAA TTATAGTCAA TAAATCAAGA GCTGTGTGGC
    GTGCTAGGGT GGTAAAAATT CCTGTTATAA TTGAAGACCT TGAAAAGATT
    CCTACTATAT CAGAGGAGAT AAAAGTGAAG TTAAGGTCCA ACCCAAACAT
    TGATGCTCCT TACTGCTATC TCTCACGGTT AGAAAGTTCA CATGGAGAGC
    TTACCATTGG TTGCAACATC AAAAGCATGA GAAGAGACGA ATGGACAACA
    GTGGAACAAG ATATTCTTTT GAAAGCTGCC AGCATTGTCA AGCAATACGA
    ATCTTGAACT TGCGAGCACA TTACAGTTCT GTTCTATCCC TCTCCATTTT
    ACTGCGAGAA GAGGTTAAAG TGGTTACTCT TTTTCTAGTT TGGTATGGGT
    ATATGGGACT GTAAATAGAG TTCTCATGTC CCATACTCTA ATGTTTTGAT
    CACATGTGCC ATATGCCTTT CCTATTTAAG GAAGTGACCC TTTGTCATCC
    TACTGTTACA TGGATACAAG AAAAGGAGAT GAAAGATGAA TCACC

    Gene models with high sequence identity

    1. AT4G00290.1 [+] show detail - Mechanosensitive ion channel protein
      E-value: 5e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily Like-Sm ribonucleoprotein (LSM)-related domain 6e-18
    superfamily Mechanosensitive ion channel MscS, transmembrane-2 0.00000000003
    HMMPfam Mechanosensitive ion channel MscS 5.6e-33

    See the detailed result >

    AT4G00290.1

    Model type
    Protein coding
    Short Description
    Mechanosensitive ion channel protein
    Computational Description
    Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR