K13022

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13022

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13022

Determination of introduced cDNA(s)

  • J023022O07 - Rice Full-length cDNAs - Original: J023022O07

    full reading [+] show sequence

    Nucleotide sequence: J023022O07 - full reading 
    GTCTACTCTT CTTCCTCCTC CCTTTCTTGG CCTCTCTCCT CCACAACCCA 
    CCCTTCCTTC CTCCCTTCCT CCCCTTGGTG CGTTCTTGAT TGCTGCAGAG 
    AGGGAAAGAG AGAGAGAGAG GGAGAGATGG GGAACATCTG TGGTGGTTCA 
    GGGAAGGCTC ATGTATCGGG GGATTGCAGG CCGCCTAGCT CAGGGACAAT 
    GACCCCCAAA ACAAGCAGCA GCGTCACAAC CAGCAATAGC ACAACTGGGA 
    AGCTCTCCTC TGTTGGCAGC AGCTTCATGG CGTCTTCCGG AAGCGGCGGC 
    ACGAGCAGCG GATTCGACGA CGGGGTGTAC CCAGAGGGCC AGATCCTGGA 
    GGCACCAAAC CTCAGGACAT TCACATTCAT TGAGCTCAGG ACAGCCACCA 
    AGAACTTCAG GCCGGATAGT GTTCTTGGGG AGGGAGGCTT TGGGAGGGTG 
    TACAAAGGAT GGGTGGATGA GAAGACGATG AACCCGGTGA AGGGCGGCAC 
    CGGCATGGTT GTTGCTGTCA AGAAGCTCAA CTCAGAGAGC ATGCAAGGTT 
    ATGAGGAATG ACAGTCAGAG ATAAACTTTC TGGGTAGGTT CTCGCATCCA 
    AACCTAGTCA AGCTCTTGGG CTACTGCTTT GAGGACAAGG AACTTTTGCT 
    CGTGTATGAA TTCATGGCCA AAGGGAGCTT GGAGAACCAT CTTTTCAAGA 
    AAGGATGTCC TCCACTATCA TGGGAACTGA GGCTGAAGAT AGCCATTGGT 
    GCAGCTCGAG GACTTGCGTT CCTGCATGCC TCAGAAAAAC AAGTCATCTA 
    CCGTGATTTT AAGGCTTCCA ACATTCTTCT AGATGCTAAC TATAATGCAA 
    AGCTCTCTGA TTTTGGGCTT GCTAAGCTTG GACCAACTGG TAGCAACTCA 
    CATATCACAA CAAGGGTCAT GGGCACATAT GGTTATGCAG CACCGGAGTA 
    TGTAGCCACT GGTCATTTAT ATGTCAAGAG TGATGTTTAC GGTTTCGGAG 
    TTGTGATGCT GGAGATGATG TCCGGTCAGC GAGCACTAGA CCCCAACCGT 
    CCTAATGGGC AGCTCAGCCT TGTGGACTGG GCGAAGCCCT ACTTGGCGGA 
    CCGGAGAAAG CTTGCCCGCC TCATGGACCC CCGGTTTGAG GGCCAGTATA 
    ACTCCAAACA AGCTGTTCAG GCGGCGCAGT TGACGTTAAA TTGCCTGGCA 
    GGTGAGCCCA GGAGCAGGCC CTCAATGAAG GAAGTTCTTG AGACACTCGA 
    AAGGATCGAA TCAATGAAGA GCCGAGCAAG GGATGCAAGA GGAAGCGGTT 
    CATCAAGGGA CCATAGCCAT GGTCGCACCA CAGCGCACCA ACGGTCATCG 
    CCGCGCCCTG ATGGTCGCCG TGGATCAAGG ACCAATGGTC ACGCCACGAA 
    GGCACGGTGA TAAACAGCAT TGGAGCTGAT GACATTCTTC CTGTAAATGG 
    CCTAAATTTT GTCTGATGTT CAGTTGGAGA TGGTGATGTT TATTTGTTGC 
    TATATCATGA AAGAAGGCCC TTGTTGCCCA ATCATGATGA GTGTAAAATG 
    TAGCAACAAG AAAGATATAA CTGTAATTTG TAACCACTAG AAATAGAAGG 
    AATAATTCTT G

    Gene models with high sequence identity

    1. AT2G17220.2 [+] show detail - Protein kinase superfamily protein
      E-value: 2e-129; Score: 459.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 1.2e-09
    superfamily Protein kinase-like domain 2.8e-64
    ProfileScan Protein kinase, catalytic domain 9.008
    ProfileScan Protein kinase, catalytic domain 33.008
    Coil coiled-coil 0
    HMMPfam Serine/threonine-protein kinase-like domain 8.4e-40
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.3e-21
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.6e-130
    Gene3D no description 7.9e-06
    Gene3D no description 4.9e-07
    Gene3D no description 9.2e-51
    HMMSmart Serine/threonine-protein kinase domain 6.1e-16
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.6e-13

    See the detailed result >

    AT2G17220.2

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR