K13028

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13028

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13028

Determination of introduced cDNA(s)

  • J013130C18 - Rice Full-length cDNAs - Original: J013130C18

    full reading [+] show sequence

    Nucleotide sequence: J013130C18 - full reading 
    GAGTCACGAT ATCCTCGAAA AGAAAAAAAG GGGAGAAAAG AAAAAAAAGG 
    CAACCACCTG AAGCGTCCGT TGGGTCCAGG AATTACGTCG AGCACGACGC 
    GGCGCCCAGC TGTACCGTCT GACCAGTAGG CCCCACCTCC CCGCCGTCGA 
    CATGCACCCG CCGGCCGCCG CCGGAGGAGA CCACGCCACG GCGGCGCCGG 
    CCCCCGCGAC CGGCGCAGCC GCAGCAACAG CGTCGGACTA CGCGCACTAC 
    CCGAGGCTCT CGCCGGAGGA CGTGGCCCCG CCCCCCCCTC CGTCCTACCA 
    CGCTGCCGCC TCCTCCGCGC CGCCCTACTC GGGCAACCCC TACGTCTCCT 
    CACCCGCCGG CGGCGTCGCG CCCGCCTCCA AGAATACAAT GGATACGGTG 
    AAGGATGTTC TCGGCAAGAT GGGGAAGAGG TTTGGAGAGG CGGCTCGCAA 
    GACGGAGACC CTCACCGGCA ACTTCTGGCA ACACTTGAAA ACTGGACCAA 
    GCATTACAGA TGCAGCAATG GGCAGGGTTT CCCAGATCAC CAAAGTCATA 
    GCAGAAGGTG GATATGATAA AATCTTCCAT CAAACATTTG ATGTCCTCCC 
    TGACGAGAAA CTGAAGAAAC CATATGCATG TTATCTGTCA ACCTCTGCTG 
    GTCCTGTCAT GGGTGTGCTA TACCTGTCCA ATAAAAAGCT GGCATTCTGT 
    AGCGATAATC CACTTGCTTA CAAGGTTGGA GACAAAGATG AGTGGAGCTA 
    CTATAAGGTT GTCATTCCCC ACACCCAACT GAGATCAGTG AATCCTTCAA 
    CGAGCAGAAC AAATGCATCT GAGAAATACA TCCAGGTGGT TTCCGTTGAT 
    AATCATGAGT TCTGGTTCAT GGGCTTCGTG TACTATGACA GCGCCGTAAA 
    GAATCTGCAG GAAGCACTTC AGGAGGCTCA GAATCTACGA GCTTAGTGAT 
    GTCCATAGAT TGGGGATAGC AAGCCCAACA TATTACAGTT TGTGATATAC 
    TCTGTGTTTC ATCAAATTGG CAGTCGTCTG TATTTTGTTG GATAGGTGTT 
    GGCATTTCTT GCAATGTGTA CCGACTTGAA ACGGTTTTTG ATATGTGACA 
    TCATGATCTC TCGATAGTTA CTCTCTGTTG TTGTCG

    Gene models with high sequence identity

    1. AT1G28200.1 [+] show detail - FH interacting protein 1
      E-value: 1e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GRAM 1.2e-17
    HMMSmart GRAM 5.1e-21

    See the detailed result >

    AT1G28200.1

    Model type
    Protein coding
    Short Description
    FH interacting protein 1
    Curator Summary
    VirF-interacting protein FIP1
    Computational Description
    FH interacting protein 1 (FIP1); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT2G22475.1); Has 416 Blast hits to 413 proteins in 43 species: Archae - 4; Bacteria - 12; Metazoa - 9; Fungi - 9; Plants - 369; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR