K13029

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13029

Determination of introduced cDNA(s)

J013158E09 - Rice Full-length cDNAs - Original: J013158E09

full reading [+] show sequence

GACTACCCAT CACTCCCCCA AGATTCCACG GATATTTTCT CTCCCCCTGC 
TCCCGTCGCC ATCGCAAAGG AGAAAAAAAA AAGGTGAGCA ATCGCTTCTC 
TGCTCGCTCG GCTCAGATCT GCGTGTGTAC GCTGGTAGAT CTGTGGAAAG 
AGGTTCAATT TTTTGAGCCC AGTTCGCGAT CTGCGGTTCC GCGAGAGTGA 
ACGGATCTTC CGGATCGTGG AAATTCATCG TTTGCTTTTC TTTTTTTTTT 
TTGTTTCTTC TTTGGATGTG TCTCCGATCT GAATCCGCTT GATCTGGACA 
GAGGAGGAAG GAAGGAAGGA TGAGCGCCAC GGCGGTGTCG TCGCTGAACC 
CGGACGCGCC GCTCTTCATC CCGGCGGCGT TCCGGCAGGT GGAGGACTTC 
TCGCCGCAGT GGTGGGACCT CGTCAAGACC ACCGCCTGGT TCCGCGACCA 
CTGGTTCCAC GAGCACCAGC AGCTCGACGA GATGGCCGAC TCCCTCGCCC 
TCCACGACGC CGCCGCCGAC GACGACGACC TCGCCGGCCT CCTCCCCGAC 
GACGCCTTCG ACGACGACGA CGACGACGAC CTCTTCTTCG ACCAGACCCA 
TAACCTCCTC GTCGATCCCC CGCAGCCGCC CGCCGCTCTC AAGACTGGTA 
CCGACTGACT CACTCGCTTG CTCGCTTTGT TGATCATCAA AAGATCGAGT 
CTAAAACGAG AATTGCAGTG AAATTCATCG CCATGTCTCC CATGTGTGTG 
TGCAGATGCG GTGCTCAAGG CGCTGAGCCT GGTGTCTCCC AAGGGCGGCG 
ACGCGCCGCG GGGGCTCCGG GAGAAGCCCC GGCACTCCGA GAAGCCCACC 
AAGTACGCCG GCAGCCCGAG GAGCGGCGGC GCTCCCCGCG TCATCCACCA 
GCCTCGCTAG GCTGCGATGG CTAGGATGGC AAAAACTAAA GGATGTAGCA 
AAAGCATTGC GTCTTTGCGC CGCGGTGTTT TGCTTTGCTT CCTTCCTCCC 
GGCTGCTGCT GCTGGTGTGG TCTACTCAAA GTCTGGGTTT GTCCCTAGAG 
TTTATCTAGG AATTTAGTTG TGTCCTTTTG TATAGTATAA ACCAAAATGA 
CCCTAAAAAA AGTATGAACA AAATGCAACC TTTGTTCAGT GTTGCCTTGT 
AAGTTTAATG TTCATCTAGA GTTCGTCTAG GAAAATTCCA AAAAGAAGAA 
GTGGAAGAAG AATGTAGTAG TGTGCACTCC TGTTAATGTT CTGATGATGT 
GCAATAGCAA GCAGCCTAAT GTTGAATATT CAGACTTTTC CC

Gene models with high sequence identity

AT2G41430.5 [+] show detail - dehydration-induced protein (ERD15)
E-value: 3e-14; Score: 77.00

InterPro Scan Digest

See the detailed result >

AT2G41430.5

Model type: Protein coding
Short Description: dehydration-induced protein (ERD15)
Curator Summary: Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.
Computational Description: EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); FUNCTIONS IN: protein binding; INVOLVED IN: response to water deprivation, response to high light intensity, response to bacterium; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2).
Link: InterPro Scan - TAIR

J013053H16 - Rice Full-length cDNAs - Original: J013053H16

full reading [+] show sequence

GAATATCAAA GATTGGGGCT CATCCCTTCC ATCACTTTGT AGTTATCAGC 
ATCTAGCAGA CTTTGGCTAT GTACTAAACT CATTTTTTTT GTGTAGTTTC 
CTCTATAATT GCAAGGAACA AACATGGTGG ATCTACTAGA GGTATATGTT 
CAGTGGTCAT AGTAGAGACT ATCCAACAAA TAGTATCTTT TATTCAGAAT 
CACAGGAGCA GAAGCATGTC AAGGAGGAGA CTCATCGTCT GCGGCAGCTT 
CTCGTCGAAA TTCACACCGC TCTGGAGGCA GCCAAGGGGT GTGCCATCAC 
CAATTCATGG CTACTACGCT GGCTACGCGA GCTTGAGGAC GCCGCATGTC 
GAGGCGATCA GACACTGCGC AACTGGAGAG ATATGTCCAG CAAGGTGAGC 
TCCATCATCG ATTCTAGTAA CTCCTTCAAA CGCATCAAGA TCGCAGCATC 
GCAGCTGATT CCATCCAAGG AATCCACCAT GAAAGTTTCT GCCACTGTCA 
AGAAGCTAGA AGCAGTAGCT TCTGGGATCC CCAAGTTCAC TCAGCTTCTC 
AGCTTGCAGA ATGACCAAGC AGTGTTACAT CATCGACCGG TTATCATCTT 
TGTTTCGATC CATGACAGGG TAGTTGGCAG AGTCGATGAG AGGAAACAGG 
CCATCGAATT CTTGCTTCAC ATAGACAAGA ATGGATCATC CTCTCCAGAT 
GGTTGTGTGC TTCCCATTTG GGGTGTCAAA GGAGTAGGTA AAACCACGAT 
TGCGCGGCTC GTATGCGACG ATCGCAAGGT GAGGAGCCAT TTCTCAATGA 
TTATATGGGT GAATTGCAGA GAATATACTA GTCCAGCCAT GGCCTTGGTA 
AAGTCATTGT GCAAGAAGCT TGGTTTGAGT TCTAACGTAA CCATTAATCT 
TTCAAGTGTG ATCAGAAAGG CTAAGAATGG AGAGATTTCT ACTTGTTCTT 
GATGGTGCTT CTAGCTACCC CAGGGGAATG AATGACATAC TCGATACACT 
GTTCATGAAA AGTAGAGCAG GAAGCAAGGC CATCATTACC ACTATGTACC 
AACATCTGGC AACTAAGATC AATAAGCATG AAAACTTACC TGTAGGGTTC 
CTGGCAATGG AAGATCTCGG CTGCATGTTC ATGGAAAATG CCCTGGGTGG 
TGCACACCCT GAAGAATACC AGAAATTACT TGTTATTGGA AAGAAGATCG 
CTGTGACATT GAGGGTGTGC AGCCCTTTAG CTGCAAAAGT TGTGAGTGGA 
CTGCTTCGAG AAAACCTCAA TGAGAAGTAC TGGTACATTG TTCTGAATCG 
CTGTCAGCAG TTCGTCGCAT CCAGTTCCAG GTTTGTTACT CCATTTATTC 
TGGGTTGTAA GCTTCTTCCC AAACACCTGC AACGCTGCTT TGGGGTGTTG 
GGTACATACC CTCGCTGGAC CTTCACAAGG GAGGAATTGA TAAGCTATTG 
GATGAACAAC TGTGTCGTCG TCAGTGAAAA TTGTATGAAA AATAGCATAG 
AGAATGTTGC GACTGATTAC TTTGATGATT TGGTGAGGAA GGCATTCATA 
CAACCATCCC ACATCCCAGG GCTGTACAAA GTGGATGACA TGCTAAGAGG 
CATAGCTCTG TACATAGGTC CAATGCCTGT TCCAAAAACA AGAATACATT 
TAGCGAATTT GATTGGGGAA GGATTTTCCA TCCACGAAGA CTTTTGGTTG 
ATGAGACTAG CAGAGTAGGG TTATAGATCA GAGCCTAGTT GAAATAAAGT 
TATAAGGTTT GATATTTGTT TC

Gene models with high sequence identity

AT3G14460.1 [+] show detail - LRR and NB-ARC domains-containing disease resistance protein
E-value: 2e-13; Score: 74.70

InterPro Scan Digest

Program	Description	E-value
HMMPfam	NB-ARC	6.9e-10
HMMPfam	NB-ARC	1e-13
superfamily	P-loop containing nucleoside triphosphate hyd	1.6e-09

See the detailed result >

AT3G14460.1

Model type: Protein coding
Short Description: LRR and NB-ARC domains-containing disease resistance protein
Computational Description: LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G14470.1); Has 38623 Blast hits to 22788 proteins in 858 species: Archae - 54; Bacteria - 2838; Metazoa - 8237; Fungi - 658; Plants - 25379; Viruses - 2; Other Eukaryotes - 1455 (source: NCBI BLink).
Link: InterPro Scan - TAIR