K13035

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13035

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13035

Determination of introduced cDNA(s)

  • J033024H06 - Rice Full-length cDNAs - Original: J033024H06

    full reading [+] show sequence

    Nucleotide sequence: J033024H06 - full reading 
    GGGTAGCAAG TGAGCGCGGG GAGAGAGACA GAAGCCGGCG GCGGCGGGGC 
    GAGATGGGGA AGAAGCAGAA GAAGCCCAGG AAGGGGAAGG AGAAGACGGA 
    GCGGAAGACG GCCAAGGGCG AGGAGAAGCG CGCCCGCCGC GAGGCCCGGA 
    AGGTCGGCGA GGAGGACGAC ATCGACGCCA TCCTCAGGAG CATACAAAAG 
    GAGGAGGCTA AGAAGAAGGA GGTACATATA GATGAGAATG TCCCTGCACC 
    ATCTCCCCGG TCCAATTGCT CGCTTACAAT AAATCCCCTG AAAGATACAG 
    AATTGGTTCT GTATGGAGGA GAGTTCTACA ATGGCAGCAA GACCTTTGTT 
    TATGGTGATC TTTATCGCTA CGATGTAGAG AAAAATGAGT GGAAGTTGGT 
    ATCTAGTCCT AACAGTCCTC CTCCACGAAG TGCTCACCAA ACAGTTGCCT 
    GGAAGAATAA TATATACATG TTTGGTGGGG AATTCACTTC GCCAAACCAA 
    GAACGTTTTC ATCATTACAA GGACTTTTGG TCATTGGATC TAAAAACAAA 
    TCAATGGGAG CAAATTCTTG CGAAGGGTTG TCCAAGTGCA CGTTCAGGGC 
    ACAGGATGGT CCTCTATAAG CACAAGATCG TGCTATTTGG TGGTTTTTAT 
    GACACTCTTA GGGAAGTGAG ATACTACAAT GACTTACATG TTTTTGATTT 
    AGGTAATTTC AAGTGGGAGG AGATCAAGCC TCGCCCTGGG TGCTTGTGGC 
    CAAGTCCAAG AAGTGGCTTT CAGCTAATGG TATACCAAGA TCAGATATAT 
    CTGTATGGCG GATATTTTAA AGAAGTAGTT TCTTCTGACA AATCTGCATC 
    AGAAAAAGGA ACAGTTCATG CAGATATGTG GACTCTTGAT CCTCGTACTT 
    GGGAGTGGAA TAAGGTTAAG AAAACTGGGA TGCCACCTGG CCCCAGAGCT 
    GGGTTTTCTA TGTGCGTTCA CAAGAAAAGG GCTGTTCTTT TCGGTGGTGT 
    GGTAGATTTG GAAATTGAAG GGGATGTCTT TATGAGCATG TTTATGAATG 
    AGCTCTATGG TTTCCAGCTG GACAACCATC GCTGGTATCC TTTAGAGCTC 
    AGGAAAGACA AGCCTGCTAA AAATAAGACA AAGGACATCA AAAGAAAAGA 
    ACCATCGAAC AATGTGGAAG ATAATCTTGG TAATGAGGAG GATGAGATCA 
    TGGAGGACTC AGAAACTACT GGAGGGCAAT CCGAAGTCCA TGGGGTTTCG 
    AATCACTTGA CCAAGAGTCT AACCTTAAAT AAAGCTGGCT CAGGCAATAG 
    CTCTGATATT CTCTCTGATT CGACAACACA AGAAGTACTC CCAGAGGCAG 
    TGAAACCCGG TGGTCGGATC AATGCATGCT TGGCTGTAGG GAAAGATACA 
    CTCTATTTAT ATGGAGGAAT GATGGAATTG AAAGATAGAG AAATTACTCT 
    TGATGATATG TATTCACTTA ACCTTAGCAA ACTAGATGAG TGGAAGTGTA 
    TCATACCGGC ATCTGAATCT GAATGGCTAG AAATTTCTGA AGATGAGGAT 
    GATGAAGATG ATGATGATGA TGATAATGAG AATGATAGCG AGGATGACGC 
    TAATCAGACC GATGAAGATG ATGAAGAGTC TGATGAAGAT GCCGAGAAGA 
    ATGTCGATAT GTCCACTGCT GTATCGCTAA TAAAGGGTGA ACGTAAGAAC 
    TTGCGAAGAA AAGAGAAGCG TGCTCGGATA GAGCAAATTC GGGTTATGCT 
    CGGTCTTTCT GATTCTCAAA GGACTCCAAT GCCAGGAGAG TCACTAAAAG 
    ATTTCTACAA GAGAACGGAT ATGTACTGGC AGATGGCTGC ATATGAGCAC 
    ACTCAACACA CTGGAAAGGA GCTCCGCAAA GATGGTTTTG ATCTTGCCGA 
    AACTCGATAT AAGGAACTGA AACCCATACT CGACGAGCTG GCTGTGCTCG 
    AGGCTGAACA GAAAGCTGAG GAAGAGGCTA GTGCTTCCAC TAGTTCCAAG 
    AAAGACACGA GGAAAAGCAA GCAGAAGAGT GGCATGAGAT AGCTTTGGTT 
    CGAAATATCG AAATAGAGAG TGGTTTAGGC CAATGCTTTA AGCCATCTGG 
    GATTTTTTCC TTTCTGAGCC ATTGGTCAGC TCGGTCGATT AATCCACACG 
    AGGTGCCTAT AACTACCTGT GTAGGTTGGC TTAATCCATG GTTAAAATTT 
    TCCAACGTAC TGTATTTGCG ATTCCTCGGA AGCATTCATG GAGAGATTGT 
    ACACAGTTCT ATCC

    Gene models with high sequence identity

    1. AT5G50310.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
      E-value: 0; Score: 844.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan PROKAR_LIPOPROTEIN 7
    superfamily Galactose oxidase/kelch, beta-propeller 1e-27
    superfamily Galactose oxidase/kelch, beta-propeller 1.7e-05
    HMMPfam Kelch repeat type 2 1.5e-05
    HMMPfam Kelch repeat type 2 4.9e-08
    Gene3D Kelch-type beta propeller 6.9e-40
    HMMPanther KELCH DOMAIN CONTAINING 4 2.3e-200
    HMMPanther KELCH REPEAT DOMAIN 2.3e-200

    See the detailed result >

    AT5G50310.1

    Model type
    Protein coding
    Short Description
    Galactose oxidase/kelch repeat superfamily protein
    Computational Description
    Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G07720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR