K13037

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13037

Determination of introduced cDNA(s)

J013002P22 - Rice Full-length cDNAs - Original: J013002P22

full reading [+] show sequence

GGTAGTCATC TCTCGCTCGC ACACAACTAA TAACCAACGA AACCACGAGC 
AGCGGCTGAT CGGTAAGCGG TAGTGGTAGT AGTAGTTTCG TTTGTACGTT 
GACCCAAGCA GCAGATGCCA ATTGCAGCAG CCGCGGTCAC CTCGCCACCG 
GCCGCCGCGC AGGTGCACGG TGTCGTGCCA AGGCATGCCT CGCCGACGCC 
ACAGCAGCGG GCGGCGCCGC GGCGGGAGCA GTCGCCGCTG AACCCGAGCT 
CGCAGTCGAT CCGGTCGGCC TCCTCCGGCA CCGAGCTCGC AGGTTCCGCG 
GCGACGGAGA CCTCCCGGGC GCACATCGCC AACCTTGACC GGGTTCTCGG 
GAAGCCACCG CAGGTGCCGA GGCCGGCGAG CCACGCGGCG GCGAGCAAGC 
AGGAGCGGCA GCAGCAGGAC GGGGAGCTGG AGCCGCTCAA CGTCAGGCAC 
GGCCTGCTCA ACGCGCTCAA CCTGTCCTTC TTCGTGCCCA TGCCCGGGAT 
GCGGGCCCGC ACCGCCGCCG ACGAGCACAT GTCGCCTCGC AGCCTCATGC 
ACATGCAGCA GCTCCTCTCC GCCGACTCCC CGCGCGCCTC GCCGAGGAGC 
ACCATCGCGC CGCGCTGGCG CAGCCTCCAC GGGGAAGACG GCTGGGCCGG 
CCTCCTCGAC CCGCTCGACT CCGACCTCCG CCGCGAGCTC CTCCGCTACG 
GCGACTTCGT CCAGGCGGCG TACCAGGCGT TCCACTCGCT GCCCACCGCG 
TCGGCGAGGC ACCGCGGGCT CATGCTCCCC GACCGCTCCT ACCGCCCGAC 
GCGGAGCCTC TTCGCCACCT CGGCGCTGTC CATGCCGCCG TGGGCGAAGC 
GCCCCAACAC CCCCGAGTGG CTCACGCAGC AGTCCAACTG GATCGGATAC 
GTCGCCGTGT GCGAGTCCGA GCGGGAGGTC GCCCGCATGG GCCGCCGCGA 
CATCGCCATC GTGCTGCGCG GGACGGCCAC CTGCCTCGAG TGGGCGGAGA 
ACCTGCGCGC CTCGCTCGTG CCTCTCGACG GCGAGAGCGG CGAAGGCGGC 
GGGCAGGAGG AGCCCAAGGT GGCACGGGGA TTCCGGAGCC TGTACAAGAC 
GGCAGGGGAG AAGGTGAAGA GCCTCTCGGA GGAGGTCATG GGCGAGGTGC 
GGCGGCTCAT GGAGAAGTAC AAGGGCGAGG AGCTCAGCAT CACGGTCGTC 
GGCCACAGCC TCGGCGGCGC CCTGGCGCTC CTCGTGGCCG ACGAGATCGC 
CACCACCGTC CCCGACGCGC CGCCCGTCGC CGTGGTCTCC TTCGGCGGGC 
CCAAGGTCGG GAACGCCGCG TTCGTGGACA AGCTCCAGAA GAACGGCAGG 
GTGAACGTCC TGCGCATCGT CAACGCCGGC GACATGGTCA CCAAGGTGCC 
CGGCGTGGCG CCGCGCCTGC CGCTCACCAA GGAGCAGTAC CAGCACGTCG 
GCGCGGAGCT GCGCATCGAC AGCAAGAACT CGCCGTGCCT CCGCCCCGAC 
GCCGGCCCGG CGTGCCGCCA CGACCTGGAG GCGTACCTGC ACCTCATCGA 
CGGGTTCACG GGGACGGGCC GCCCGTTCCG GCACGACGCG CGCCGCAGCG 
TGATCCGGCT GCTGCAGTTG CAGAGGGGGA ACGTGAAGAA GGAGTACGTG 
AACCGCGCCC GGGAGCTCGG CGTCGACCCC TCGGCGCCGG TGGACGTCGG 
CCGGAGCATG GCGTACGGGA ACTGCGCCGT CGCGAGCCCC TCCTCGTGAG 
ACGACGAGAT TGACGTCTTC TTCCAAGAGC CCTTAATTAT GTAAATTTTT 
GTAGAAGCAG ACCAACAATT CTTTCGTTAG TCAGGGGTGT CAGCGGGAAA 
AAAGATTTTC CCTTGTCATT TGACGTATGT ATGTACAGTA CATAAAAACT 
ATTATACTTG CAAAAAAAAG GAAAAACATT ATGT

Gene models with high sequence identity

AT4G16820.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
E-value: 5e-108; Score: 389.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Lipase, class 3	4.8e-36
Gene3D	no description	2.8e-37
superfamily	alpha/beta-Hydrolases	1.7e-51

See the detailed result >

AT4G16820.1

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Curator Summary: Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G44810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR