K13041

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13041

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13041

Determination of introduced cDNA(s)

  • J013095F21 - Rice Full-length cDNAs - Original: J013095F21

    full reading [+] show sequence

    Nucleotide sequence: J013095F21 - full reading
    GGATTCGCTC TCGTCCCCTT CCCTCTCCTC TCTCGCTCGC TCCTCTTCCG 
    CGGCGCGCGC GCCGGCGACT CGCCGCGTCG GGCCGGCCGA CAACCGCCGC
    GAGGGAGAAG CCCCCTCCCC TTGGGGGGCA CCCATGACGT CGTGCGGGTG
    CCTGGTGCTC GAGAAGGTGG AGGACCACGG CGGCGAGGCG GCGGGGAGGG
    GGAGAGGGAG GCTCGCGCAG GGTGGCGGCG GCGGCGGCGG TGGCTGCGGA
    TCGTGCGCGG GGGAGTGGAG GAGCCGGTCG GAGACCATGT TCCCCATCTA
    CGTGATGGGG AGCTCGCGGG CCAGCTCCGC CGCGGCGGCG CGGGGCATAG
    TCGACGCCGC CGGGGACCCC ATATGGGAGG CCGTCAAGTC GGAGGCCAAG
    TCTGAGGCAG AGAAGGAACC TATTTTAAGT AGCTTCTTGT ACGCCAGCGT
    ACTATCTCAT GACTGTCTCG AGAGGGCGTT GAGTTTCGTC CTTGCAAACA
    GGCTCGAAGA TCCAACATTG CTTGCAACTC AGTTAATAGA CATTTTCAAT
    GATGTTATGA TGAACAACAA AGATATACGC CGTTCTATTC GCCTTGATGC
    TCAGGCCTTT AAAGACAGAG ATCCTGCCTG TGCACAATAC AGTTGGGCAT
    TGTTGTACCT CAAGGGTTAC CATTCCGTGC AATCCTATAG GATAGCTCAT
    GTATTATGGA ATCAAGGTCG TAAAGTTCTG GCATTGGCAC TGCAGAGCCG
    TATCAGTGAG GTTTTTGCAG TGGATATACA CCCAGCGGCC AGAATTGGAG
    AGGGAATATT GTTGGATCAT GGAACGGGTC TAGTTATTGG TGAAACTGCC
    ATTGTTGGAA ACTGGGTTTC ATTAATGCAG GGTGTTACAC TTGGTGGTAC
    TGGCAAGGAA AATGGAGATA GACACCCCAA GATTGGTCAG GGGGCTCTTC
    TTGGAGCTGG TGCTACTATC CTCGGCAACA TAAACGTAGG CGAAGGTGCC
    ATGATTGCTG CTGGTTCCCT TGTTTTAAAG GATGTACCTC CCCACAGTAT
    GGCAGTAGGA AACCCTGCAA AGGTAGTTGG GTATAAAGAT AAGGAAGACC
    CTTCTTTAAC TATGAAACAT GATGCCAGAA GAGATTATTT TGAGCATGTT
    GCCGTTAGTT TTTCAGATGA CAGAGCTAAT GGAAGTGTTG TGAAGTAAAA
    AAAGGTTCGA TGATGTTTGG CTGGCAGTTC AAAGGAATAG CATATGTTTC
    GACATTTCTT CCCAGAGGAC AGCACTGGGT ATCTGATTAT GCAAGGGTGC
    TTCTCTTTTT TGCCCAGGTA CCCATGGTCC TGAAGCTCCC CAGTTATATT
    TTCTCGTGGC CTTTGGACCG CTGTAATAAT GTGATGTTTA TTTTTCTGGT
    TACTTTGTAA GGACTATGTA CTGGTAGTGG AGACCAGTAC ATAGTTGCTA
    CTGGTAGTAG AGACCAGCAG CAACTATGTA CTTCAGAATA CAAGCTTTCT
    TTTTTGAATC CCAGTAGCAT CAGCGTAGTG CTTAAGACTT AGTGCAAGCT
    TTCTTTTCTG AATCAGTAGC GTGAAGTATA TTCTACAGTA CTAGCCTATT
    AGGTAAAGAT GTTTTTCTTT TGATGTACTA ACCCATCAGA AAAAAAATGT
    TACATCTGGA TGGGATAATA AAAAAGGAGG CAATTGTTAA ATCC

    Gene models with high sequence identity

    1. AT4G35640.1 [+] show detail - serine acetyltransferase 3;2
      E-value: 6e-102; Score: 368.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine acetyltransferase, N-terminal 4.1e-36
    PatternScan Hexapeptide transferase, conserved site 0
    HMMPanther SERINE ACETYLTRANSFERASE 0.00000000027
    HMMPanther SIALIC ACID SYNTHASE-RELATED 0.00000000027
    HMMTigr Serine O-acetyltransferase 3.1e-90
    Gene3D no description 6.2e-49
    Gene3D no description 8.8e-36
    superfamily Trimeric LpxA-like 5.6e-63

    See the detailed result >

    AT4G35640.1

    Model type
    Protein coding
    Short Description
    serine acetyltransferase 3;2
    Curator Summary
    Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced in both roots and shoots under sulfur-starved conditions.
    Computational Description
    serine acetyltransferase 3;2 (SERAT3;2); CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Serine O-acetyltransferase (InterPro:IPR005881), Trimeric LpxA-like (InterPro:IPR011004), Serine acetyltransferase, N-terminal (InterPro:IPR010493); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT2G17640.1); Has 22944 Blast hits to 22937 proteins in 2578 species: Archae - 362; Bacteria - 17118; Metazoa - 7; Fungi - 225; Plants - 280; Viruses - 18; Other Eukaryotes - 4934 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR