K13042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased length (PATO:0000573) (Rosette leaf::Shape::long) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13042

Determination of introduced cDNA(s)

J033135H03 - Rice Full-length cDNAs - Original: J033135H03

full reading [+] show sequence

GAGTTGGATG ACTAGCTAGA TAAGAAGGCT TAGTGGGGAT TCCTTTACAT 
GGCGCGTTAT TAGATGTGCC AAGAGCTATA TTGATCCAGA GACCAGAATT 
TGAGCCCTGA ATTCAACTAC AAAAAACATT TTGGCTGTTG GAAAAGAAGA 
TCGTGTTGAT TGGAATTGTA AGTAGTCCTA GCTAGTGCTG CGTCCAGTTT 
TGTTTCTTGA TACTCTCTCT CTACAAAATC ATAATCCCAT TTTATGTGTG 
TGCGCTGTGC AAGCCGCAGG AGATCTTGAG TAGATCAGGG ATCAGTGTGT 
ACGTGAGAAG AGTCGGGCAA GCAGCAATGG AGCATGTGGT GGGTGCTTCG 
GAGGCCACCA TGAGGTCTCT GCTGACCAAG CTCGGGGGCT TACTCTCCCA 
AGAGTACGCT CTCATCCGTG GCGTCCGGGG AGACATCCAG TACATCCGCG 
ACGAGCTGAC GAGCATGCAG GCGTTCATCC GCGACCTGAG CGGCACGCCG 
GAGGGCAAAG GCGACGAGCA CGACCACCGG ATGAAGGACT GGATGAAGCA 
GATCCGCGAC GTCACCTACG ACATCGAGGA CTGCATCGAC GACTTCGCGC 
ACCGCCTCTC CCACGACCCC GGCGGCGACT ACCTGTGCGG CTTCGTCGTG 
TCCAGGGTGT ACGAGATCCT CACATGGTGG CCTCGCCGCG ACATCGCCTC 
CAACATCGCG GAGCTCAAGA TGCTGGCGCA GCAGATCGGC GAGCGGCGCA 
CGAGGTACGG CGTCGAGAAC CCCCAAAAAG ATCGGGAGAT GAGAACAAAT 
CCGGTCCAGC CACCATTGGA TTTGATGCCG CCGAGAACCA GCACACAAAC 
CTTGAGAGCT GGTGGGAGTG GAGGCCTACA TGAAGGAGCT GACGAAATGG 
GTGACGAACG AGACATACCA AGACGGCGTG CTGTCCGTCC TCGGTTTCGG 
AGGGGTGGGG AAGACAACCA TCGCCACGGC ACTGTACCGG CAACTCGGCG 
ATCAATTTGA CCGGGGCGAT GGTCACGGTG TCCCAGAGCT CCGACGTTGA 
GGCCATCTTG AGAAGCATAC TTGAACAAGT CATGCCGCAG TCCAAGGATG 
GTCAGGAGCT GCAGGGTGGC CACGCCTCCC AGAAGAAGCT TCTACATCAG 
GCAGTCATCA GCTACTTGCA TCCTCTCATG CCCAAGGCCC TCCGACGCCG 
AAGCAGCTCC AACTCCAACT CCGACAACTC CAAGATTAGA GAGGGGAAGC 
TAACGCGTCT CCCGAGAGCT CTCACCCTGG ATCGCCAGTA TGACCACGAT 
CCGCAGGACG GCAACGATGC TGCCGCCGGC TCATCTGAGA CAGTAGTAAC 
AACCCCTGCA ACGAAAGGCA CGGCCACCTC CGATGAAAAG CCTACTAGTG 
TCATTGCTAC CATACGGGGT GCCTTCAGGC CCTGGGATCG CCGTCGCCAC 
CCACCGCAGG ATGACAAAGG TGGTAGCACC TCAGGCTCAG GGAAGGAGGC 
TATTAACATT CAAACAATGA ACAAGCCCGG CGAAAAAAAC ATTCAAACCA 
TGAAGCGTGA CGGTCTCTCA AAATTGCTGC AGGAGCACCT AAATCAAAAA 
AGGTATTTCC TATTAATTGA CGATGTGTGG TCTGCCACAA CTTGGGAGCA 
GATCAGAAAG CACTTGCCTA CAGATAACCT AAGCTACAGA ATAATAGTTA 
CCACAAGGTT TCAAGCTGTT GCTACCGCAT GTAAAAGGAA AGAAAGTGAC 
CGCATTCACA AAGTGGATGT TCTTCGCGGA AAAAAACCCG AAAAACTCTT 
CAATGAAGTC GAGTCCGAAT CCAGAATCAG CAAAGATGGT GAACGGAAAG 
AGATAGATGA TGGTGAACAG AAAGAGAGAG AAGGTCAACA GAAAGAGATA 
GATGGTGAAC AGAAAGATAT AGTGCGTCCC CGCAGGATCT GGGAAATGTG 
CAGCGGGCTT CCATTGGCCA TTGTCACCAT GGCTGGTCAC GTGGCCTGCA 
ACTCAGACAA AGATGAGACA CATTGGCTTA ATGTCTGTAA ATCTCTAGTT 
CCAGAGTCGG GAAGAGATAT GACACAGGAG GGTGTAACCA GAATACTTGG 
TCATTGCTAC AATGATATGC CTGCCGAGCT GAGGACTTGC TCTCTGTACC 
TGAGTATATT CCCGAAAGGC AACAAGATTA GCAGGAAGCG GCTGACAAGG 
CGATGGATAG CTGAAGGCTT TGTCAGTGAG AAGCAGGGGC AGAGTGTGGA 
GGATGTTGCG GAGGCATGCT TCTGTTGGAA ATATAGTCAT TAATCGGCAT 
ATTTTAATCC AAAAGGTTAA AGC

Gene models with high sequence identity

AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
E-value: 8e-20; Score: 96.30

InterPro Scan Digest

Program	Description	E-value
superfamily	P-loop containing nucleoside triphosphate hyd	0.00000052
HMMPfam	NB-ARC	0.0000032
HMMPfam	NB-ARC	1.1e-33

See the detailed result >

AT3G07040.1

Model type: Protein coding
Short Description: NB-ARC domain-containing disease resistance protein
Curator Summary: Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
Computational Description: RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
Link: InterPro Scan - TAIR