K13111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13111

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13111

Determination of introduced cDNA(s)

  • J013002P09 - Rice Full-length cDNAs - Original: J013002P09

    full reading [+] show sequence

    Nucleotide sequence: J013002P09 - full reading 
    TGTCAGAGAG CTGAGGGAGC CATGGCCATG GAGAAGAGCC GGGTCCTCGT 
    CGTCGGCGGC ACCGGCTTCG TCGGTCGGCG GGTCGTGGCG GCGAGCTTGG 
    CGGCGGGCCA CCCGACCTAC GTCCTGCTCC GGCCGGAGAT CGGCCTCGAC 
    ATCGACAAGC TCCAGATGCT GCTGGCCTTC AAGGCGCGGG GCGCGCGGCT 
    CCTCGAGGCG TCGCTCGACG ACCACGACGG CCTCGTCGCC GCCGTCCGGC 
    AGGCGGACGT CGTCGTCTCC GCCATGTCCG GCGTCCACTT CCGCAGCCAC 
    AACCTCATGC TCCAGCTCAA GCTCGTCGAG GCCATCAAAG ATGCTGGAAA 
    TGTCAAGCGA TTCCTGCCAT CTGAATTCGG CATGGATCCA TCAAGGATGG 
    GGGACGCTCT AGAACCTGGG AGGGTTTCAT TTGATGAGAA GATGGTGATA 
    AGGAGAGCAA TTGAGGATGC AAACATCCCC CACACATATG TTTCTGCCAA 
    TTGCTTTGCA GCTTACTTCT GTCCTAACCT CTGTCAGATG AAAACTCTCC 
    TCCCTCCCAA AGAGAGAGTT GGTGTGTATG GAGATGGCAA CGTCAAGGTG 
    TTTTTCGTGG ACGAAAATGA TGTGGGAACA TATGCAATAn AATCAATCGA 
    TGATCCTCGC ACCTTGAACA AGACAATATA CATAAGGCCT CAAGATAACT 
    GTCTCACTCA GAACGAGTTG ATCTCAAAGT GGGAAACACT CACTGGGAAA 
    AGTCTTGAGA AATTCCACAT ACCTGGTGAT GAATTTTTGG CTTCTATGAA 
    AGATTTGGAT TTTGCTAGTC AAGTAGGAAT AGGACATTAT TACCACATCT 
    TTTACGAGGG CTGCCTGGCA AACTTCGAGA TTGGTGACAA TGGTGCCGAG 
    GCAACTCAGC TCTACCCAGA GGTTCAGTAC ACCCGCATGG ATGAGTACCT 
    GAAACGCTAT ATCTAACCGG TTCAAATTTA AAGCATCTGT TTGTCAAATT 
    TAAAGATTGT AATCCGCAAA TGAGCATCCC TGGTCGATCT TCCCCTACCA 
    GAATTGTTCA ACGACAATAT GCCTGCTCGA ATTTATGGTA CTAGTAGTCT 
    AGTACATCCC CTCTTGTTTG TTGACTCTGT TGTACTATCA AGTTGGATGG 
    GTGGAAAGTT CAAACGATGG TTAGCATGTT CATGTTCAGA CCGGTATTTT 
    GG

    Gene models with high sequence identity

    1. AT1G32100.1 [+] show detail - pinoresinol reductase 1
      E-value: 1e-107; Score: 387.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 1.8e-59
    HMMPfam NmrA 2.2e-74
    Gene3D NAD(P)-binding domain 5.9e-19
    HMMPanther NITROGEN METABOLIC REGULATION PROTEIN NMR-REL 0.000000013

    See the detailed result >

    AT1G32100.1

    Model type
    Protein coding
    Short Description
    pinoresinol reductase 1
    Curator Summary
    Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol.
    Computational Description
    pinoresinol reductase 1 (PRR1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: pinoresinol reductase 2 (TAIR:AT4G13660.1); Has 2085 Blast hits to 2085 proteins in 479 species: Archae - 27; Bacteria - 779; Metazoa - 2; Fungi - 496; Plants - 600; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR