K13112

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13112

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13112

Determination of introduced cDNA(s)

  • J033112C19 - Rice Full-length cDNAs - Original: J033112C19

    full reading [+] show sequence

    Nucleotide sequence: J033112C19 - full reading
    GCCTAACCCC TGACCACCCC CCCGCCTCCG CACCCGCCTC CGGTTGCCTC 
    CTCCCCTCTC GGCGGGCGGC GGCAGCAGCG GCGGCAGAGT CAGCAGACCT
    CGCCGGGAAG CTAAAGCCCT AAAGCTCGCG GAAGGGTTTA TCGCAACGGG
    CGATGGCGGC GGCGGAGCAG AAGGGGAAGA AGCCGAGGAC CGACGGCGCG
    GAGGCCGAGC CCGTCGACGC CTAACCCCTG CTGCAGTCCA TCGAGAAGCT
    CCAGGAGATC CAGGACGAGA TCGAGAAGGT TAATGAGGAA GCATGTGATA
    AAGTTCTGGA GTTGGAACAG AAATACAACG AGGTTCGCAG ACCAGTTTAT
    GTTCGACGGA ATAAAATTAT CAAGCAAATT CCTGACTTCT GGCTGACAGC
    GTTTCTTAGC CATCCTATGC TTGGTGAACT ATTAACTGAA GATGATCAAA
    AGATTTTCAA ACACTTGGAG TCTATCGATG TGGATGACTC AGAAGATATC
    AAATCAGGCT ACTCCATTAC TCTCACATTC TCCCCCAATC CATATTTTGA
    AGATACAAAG CTTACAAAAA CATATTCCTT TAGTGACGAT GAAGCAGTCA
    AAGTAAAGGC TACCTCCATC AGGTGGAAGA AAGGAATGGA TATTGCCAAT
    GATCGTGCGT ACACGAAGAA AGGGGACAAG CGAATCTTAA TTGATGAAAG
    TTTCTTTACT TGGTTCAATA GTGAAAAGAA CAGAAGTTTT GCTCATGGAG
    CTATGGATGA GGTGGCAGAT GTCATCAAGG AAGATCTGTG GCCTAATCTT
    TTGAAGTACT TCAACAATGA ATTTGAAGAA GAATTAGAGC TACTGGATGA
    CGATGACGAG GTATCTGATG ATGACGATGA GGAGGAGGAT GATGAAGACC
    AAGGTGAAGG AGAGGAGGAT GGAGAGGAGA ACTGAGCTCT CTGTCATGTC
    AGATTCTTTT GGCCTGGACA ACTTATGTCT GCAGAAAGCG GAGACCGGGC
    CTCCTGGAGG GCTGAAACAG CAGGGCGTCC CCTTTTGCGG CGTTGTGGTG
    CTCGACTTAG CTGGCAGTGT AGGGACTTGC TCCGAAAAAC TTTGTTCTAT
    GGAGAAATAA CTCGAGTTCA ATAGATGATT TTGTTGCATG CGCGATCGAA
    ATGTTGCGTG TTGTTTGGAA GTGTTATTTA CCTTGCCGTT GGATTAGTGT
    TTATAACGCT ATTATATATA GAGAATGATC AAATTAAATT TTGCT

    Gene models with high sequence identity

    1. AT1G18800.1 [+] show detail - NAP1-related protein 2
      E-value: 6e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nucleosome assembly protein (NAP) 3.3e-48
    Coil coiled-coil 0
    HMMPanther SET 1.2e-85
    HMMPanther Nucleosome assembly protein (NAP) 1.2e-85

    See the detailed result >

    AT1G18800.1

    Model type
    Protein coding
    Short Description
    NAP1-related protein 2
    Curator Summary
    Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.
    Computational Description
    NAP1-related protein 2 (NRP2); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell proliferation, cell differentiation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1-related protein 1 (TAIR:AT1G74560.2); Has 4380 Blast hits to 3595 proteins in 373 species: Archae - 7; Bacteria - 141; Metazoa - 1827; Fungi - 714; Plants - 336; Viruses - 93; Other Eukaryotes - 1262 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR