K13114

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13114

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13114

Determination of introduced cDNA(s)

  • J013142D12 - Rice Full-length cDNAs - Original: J013142D12

    full reading [+] show sequence

    Nucleotide sequence: J013142D12 - full reading 
    GACACCGACT TAACACTTGG TCATTTCTCA TTTGTGCGTC ACGGAGTGAG 
    CAGTGTACAT ACGTTACTAG CTCAAGGCTG CAGCGGAGAG AGAGAGAGAG 
    AGAGAGAGAG AGATGGGCGC TGTGGCTGCG GTTCGTGCCG CGGTCCTGGT 
    CGTGGCCGTG GCCCTCGCCG CGGCGGCGGC CGGCGCGTCG GCGCAGCTGT 
    GCGACAAGTA CTACGACGGG ACGTGCCCGG ACGTGCACCG GATCGTGCGG 
    CGCGTGCTGA AGAGGGCGCG GCAGGACGAC CCCCGCATCT TCGCCAGCCT 
    CACCCGCCTC CACTTCCACG ACTGCTTCGT CCAGGGTTGC GACGCGTCGA 
    TCCTGCTGGA CAACAGCACG AGCATCGTGT CGGAGAAGTT TGCGACGCCG 
    AACAACAACT CGGCGCGGGG GTACCCGGTG GTGGACGACA TCAAGGCGGC 
    ACTTGAGGAG GCCTGCCCCG GCGTCGTCTC CTGCGCCGAC ATCCTCGCCA 
    TCGCCGCCAA GATCTCCGTC GAACTGTCCG GAGGCCCCCG GTGGCGCGTG 
    CCCCTCGGCC GGCGCGACGG CACCACGGCC AACCTCACCG GCGCCGACAA 
    TAACCTCCCC AGCCCCCGCG ACAACCTCAC CACCCTTCAG CAGAAGTTCG 
    CCGCCGTCGG CCTCGACGTC ACCGACCTCG TCGCCCTCTC AGGGGCGCAC 
    ACGTTCGGGA GGGTGCAGTG CCAGTTCGTG ACGGACAGGC TGTACAACTT 
    CAGCGGGACG GGGAAGCCGG ACCCGACGCT GGACGCCGGC TACCGGCGGG 
    CGCTGGCGAA GAGCTGCCCG CGGCGGGGCG GGAACTCGTC GGCGCTGAAC 
    GACCTGGACC CGACCACGCC GGACGCCTTC GACAAGAACT ACTTCGCCAA 
    CATCGAGGTG AACCGCGGCT TCCTCCAGTC CGACCAGGAG CTCCTGTCCA 
    CGCCGGGCGC GCCCACGGCG GCGATCGTCA ACAGCTTCGC CATCAGCCAG 
    AAGGCCTTCT TCAAGAGCTT CGCCAGGTCC ATGGTCAACA TGGGGAACAT 
    CCAGCCGCTG ACGGGCAGCC AGGGGGAGGT CCGGAAGAGC TGCAGATTTG 
    TCAATGGAAG TTAAGGGAGG AGGACCCGTT AGCTCGAAGG ACTGAGTTAT 
    TCTTGTACTG TAAAACGGAT TGAAGATCAA TTTATTTCAT TTACGGATTT 
    G

    Gene models with high sequence identity

    1. AT5G06720.1 [+] show detail - peroxidase 2
      E-value: 2e-105; Score: 379.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 2e-71
    PatternScan Peroxidases heam-ligand binding site 0
    superfamily Haem peroxidase 1e-113
    ProfileScan Haem peroxidase, plant/fungal/bacterial 78.882
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Plant peroxidase 3.9e-66
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 7e-33
    Gene3D no description 3.4e-61

    See the detailed result >

    AT5G06720.1

    Model type
    Protein coding
    Short Description
    peroxidase 2
    Computational Description
    peroxidase 2 (PA2); FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G06730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR