K13115

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13115

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13115

Determination of introduced cDNA(s)

  • J033126D12 - Rice Full-length cDNAs - Original: J033126D12

    full reading [+] show sequence

    Nucleotide sequence: J033126D12 - full reading 
    GAGCGACGAT TAACAAAAAC CACAACCATT ATTAATCCTC CTCCTCATCC 
    ATCCTCTTCA ATTCCTCTCC GTATTAATCG AAACCACAAG AGCGAGCTAG 
    CTAGCGATAT ATCCCCCTCT CTCTCTCGTC TCAAGAAGAT CGATCTCCAA 
    AATCGAACAA AAGCAGTATT CGATCAGGTG TTCGTCGTCA GAAGAAGAAG 
    AAGCGAGCGG ATAGGTGATC GCCTGTGAGG AGATGTCGTC GGCGACGGAC 
    GGCGCGGCGT CGAGGCTCGG CGTCGCCGGG GCTCTGGGGA TGTCGGTCAC 
    GTCGTCGGTG GCTATTGTCA TCTGCAATAA GTACCTTATC AGCACCCTGG 
    GCTTCTTCTT CGCGACGACG CTGACGAGCT GGCACCTGAT GGTGACCTTC 
    TGCACGCTGT ACGTCGCGCA GCGGCTGCGG TTCTTCGAGG CGAAGCCGAT 
    CGATGCGCAG ACCGTCATCT CCTTCGGGCT GCTCAATGGT ATCTCCATTG 
    GCCTCCTCAA CCTTTGCCTT GGATTCAACT CAGTTGGCTT CTACCAGATG 
    ACCAAGCTGG CTATCATACC ATTCACCATG CTCTTGGAAA CCATCTTTCT 
    TAGCAAGAAG TTCAGCCGGA GCATCAAGAT CTCCCTCATG GTCTTGCTCC 
    TTGGAGTCGG TATCGCGTCG GTGACCGATC TCCAGCTCAA TCTCCTCGGC 
    TCGATCATCG CAGTGCTCAC CATCGCCGCG ACGTGCGTCA GCCAGATTCT 
    GACGAACCAA ATCCAGAGGA GGCTGAAGGT GTCGTCGACG CAGCTGCTGT 
    ACCAGTCGTC GCCGTACCAG TCCGCCGTGC TGCTCGTCAC CGGCCCGTTC 
    GTCGACAAGC TCCTCACCAA CCGCGACGTC TTCGCCTTCA CCTACACCTT 
    CCAAGTCGTG GCGTTCATCG TGCTGTCCTG CTCGATCGCG GTGTGCGTGA 
    ACTTCAGCAC GTTCCTGGTG ATCGGGACGA CGTCGCCGGT GACGTACCAG 
    GTGCTGGGGC ACCTCAAGAC GTGCCTCATC CTCTCCTTCG GCTACGTCCT 
    CCTCAGGGAC CCCTTCACCT TCCGCAACGT CGCCGGCATC CTCGTCGCCA 
    TCTTCGGGAT GGGCCTCTAC TCCTTCTTCT CCGTCTCCGA GTCCCGCGAC 
    AAGAAGCTCG CCGACGGCCC CTCCCCTCCT CTCCCCATCT CTTCCTCCCA 
    GATGGCGGAG ATGAAGGACT CGGAGCCGCT GCTGGGCGGC GGCGGCGGCG 
    CGGCGGCGAA GAGCTCGCCG TGGAACGAGG TGAAGGGGTT GCAGAGCTTC 
    GACGAGGTGC CGAGGACGGC GAAGAGCGCG TTCAGCCGGC CGTGACGACG 
    ACGACGACGA GGGCGGACGC GTGCGCGCGT GACAGCTAGG ACTGTAGCTA 
    GTGCAATTTG GGCTGCGACA GCACAAGGAG AATTTGGGGG GAAAGAACAT 
    ATCATATGCG TCTCATCTCA CCGCAGTTCT TTCTGTTCTT TTTTTGTTGT 
    AGATGATGAC GTAATGTGTT GGTTTGTTGA AATTTTTAAT GGTTCTTGGG 
    AAGCATCGAG AGGTTCTGAC AGATATGCTA ACTCCGTTCA CAAATATAAG 
    CACTTCTAGA AAGGGTTAAG GTTATTACC

    Gene models with high sequence identity

    1. AT1G06890.3 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 1e-110; Score: 397.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 9.5e-31
    superfamily Multidrug resistance efflux transporter EmrE 8.6e-05
    superfamily Multidrug resistance efflux transporter EmrE 0.00044
    HMMPanther SOLUTE CARRIER FAMILY 35 8.2e-88

    See the detailed result >

    AT1G06890.3

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2).
    Link
    InterPro Scan - TAIR