K13127

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13127

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13127

Determination of introduced cDNA(s)

  • J033121M03 - Rice Full-length cDNAs - Original: J033121M03

    full reading [+] show sequence

    Nucleotide sequence: J033121M03 - full reading 
    GGATTAAACC TGATTTCCCC TTGCTAATTC GGGCCATCGC ATCACTCCCC 
    CAACTAATCA CACTCCTCTC TTCTCCGCTT CCTCTTCTCG TATATTTATA 
    ACCCCACTTC CCTTTTCTTC CTCTTTCTTC TCATCTTGGT TTCTTCCTAG 
    TTTCGGGAGA GGATTTTAGT GAGGGATTTG AAGGATTTTG AGGTGGGAGA 
    GGAGATGGAG TTGCCGGCGG ATGGGAGCGC GCTGGCGAGG CAGGGGTCGA 
    TCTACTCGCT GACGTTCGAC GAGTTCCAGA GCGCGCTGGG AAGCGCCGAG 
    AAGGATTTCG GGTCGATGAA CATGGATGAG CTGCTGCGCA ACATCTGGAC 
    GGCGGAGGAG TCGCAGGCCA TAGCGCCGGC GGCGGCGGCT GCTTCGGCGG 
    CGGCGGTGGT TGGGGACGCG CAGCAGCAGC AGCAGCCGAT CCAGAGGCAG 
    GGGTCGCTGA CGCTGCCACG CACGCTGAGC CAGAAGACGG TGGACGAGGT 
    GTGGCGCGAC ATCATGGGCT TGGGCGGCAG CGACGACGAA GACCCCGCGG 
    CGGCGGCGGC TGCGGCGGCG CCCGCGCAGC GGCAGCCGAC GCTGGGGGAG 
    ATGACGCTGG AGGAGTTCCT GGTGCGGGCC GGCGTCGTGC GGGAGGACAT 
    GGGGCAGACC ATCGTGCTGC CGCCGCAGGC GCAGGCGTTG TTCCCCGGGA 
    GCAATGTGGT CGCCCCGGCC ATGCAGCTCG CCAACGGGAT GCTGCCTGGT 
    GTCGTCGGCG TCGCCCCCGG CGCCGCCGCC GCGATGACGG TGGCGGCGCC 
    GGCCACGCCG GTGGTGCTGA ACGGGCTGGG GAAGGTGGAG GGCGGGGATC 
    TCTCGTCGCT CTCGCCGGTG CCTTACCCAT TCGACACCGC GCTCAGGGTG 
    AGGAAGGGCC CTACCGTCGA GAAGGTGGTG GAGAGGCGGC AGAGGCGGAT 
    GATCAAGAAC AGGGAGTCCG CTGCTAGGTC TCGCGCGCGG AAGCAGGCTT 
    ATATAATGGA GTTGGAAGCT GAGGTGGCAA AACTGAAGGA ACAGAAGGCT 
    GAATTGCAGA AAAAGCAGGT GGAAATGATA CAGAAGCAAA ATGATGAGGT 
    CATGGAGAGA ATCACTCAGC AACTTGGACC AAAGGCAAAG AGATTTTGCC 
    TCCGACGAAC ACTGACTGGT CCATGCTGAA GCCAGAGTCT CCGGTTTCGC 
    CGTGGCGCTC AGCTTCAGAG TTGCTTCTCT CCTTGTTGGT GAATGGTGAT 
    GGCTCAGTCT CTTGGACGGT CGAATGCTGG CGTCGATTAC TCACTAGGTT 
    TAGCTGCGAG ATCGTTGCGT GAGCAAAGGC ATACTATCTA ATCTGTTTAA 
    CTCCTTATTT AGGGAAATCT GGCATGGTGA AAACGGGGCA TGCCATCTGT 
    GTTTGTTGTT TTTGTGCAGC TGTTGCATCT GCTCTGTATG TTGCTGTTGC 
    GTTGACATGT CATCCCGTTT ACAGTTCAGT GATTCTGTTC TGTACCC

    Gene models with high sequence identity

    1. AT1G45249.3 [+] show detail - abscisic acid responsive elements-binding factor 2
      E-value: 2e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 0.00000000000041
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.657
    HMMPfam bZIP transcription factor, bZIP-1 0.00000000001
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0
    HMMPanther CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF 0.0000005
    HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 0.0000005

    See the detailed result >

    AT1G45249.3

    Model type
    Protein coding
    Short Description
    abscisic acid responsive elements-binding factor 2
    Curator Summary
    Leucine zipper transcription factor that binds to the abscisic acid (ABA)
    Computational Description
    abscisic acid responsive elements-binding factor 2 (ABF2); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: abscisic acid responsive elements-binding factor 3 (TAIR:AT4G34000.2).
    Link
    InterPro Scan - TAIR