K13133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13133

Determination of introduced cDNA(s)

  • J013064C04 - Rice Full-length cDNAs - Original: J013064C04

    full reading [+] show sequence

    Nucleotide sequence: J013064C04 - full reading 
    GGGAGACGGC GACGGATTGC GCGGGCGCAA GCAGCACTCA AGTTCGCTAG 
    TCCTCCTCCT CCTTCCTGTG TAGTGGAGCG AGGCGAGGCG AGCCGACGCC 
    ATGGCCGCGG CGCAGCGCTG GCTCCCTGGG ATCCTCCGCC GAGGGGACGG 
    GCTCGCGCGG CGCCTCTACT CCTCCGCCTC CTCCCTCCTC TTCGACGACA 
    CCCAGGAGCA GTTCAAGGAG AGCGTGCACA AGTTCGCGCA GGAGACCATC 
    GCCCCGCACG CCGCCGCCAT CGACGCCTCC AACCATTTCC CCAAGGACGT 
    CAACCTCTGG AAGCTCATGG GCGATTTCAA TCTCCACGGC CTCACCGCCC 
    CAGAGGAGTA TGGTGGGATG GGGCTCGGCT ACATGTACCA CTGCATTGCC 
    ATGGAGGAGA TCAGCAGGGC GTCCGGCTCG GTCGGCCTGT CTTACGGCGC 
    TCACTCCAAC CTCTGCATTA ACCAGCTGGT CCGGCATGGC AGCCCTGCCC 
    AAAAGCTCAA GTACTTACCA AAGCTAATCA GTGGGGAGCA TGTGGGGGCA 
    TTGGCGATGA GCGAACCCAA CTCTGGTTCT GATGTTGTCA GTATGAAGTG 
    CAAAGCTGAG AAAGTAGATG GTGGTTATGT CATTAACGGG AATAAGATGT 
    GGTGCACCAA CGGGCCATCT GCTCAGACAC TGGTTGTGTA TGCAAAAACA 
    GATATAGCTG CTGGATCAAA AGGAATAACC GCGTTCATAA TTGAGAAGGG 
    GATGCCCGGG TTCAGTACTG CACAGAAGTT GGACAAGCTT GGCATGAGAG 
    GAAGTGACAC ATGTGAGCTT GTGTTCGAGA ATTGTTTTGT GCCCCATGAA 
    AACGTTCTCG GGGAAGAAGG GAAAGGTGTT TATGTCATGA TGTCAGGGCT 
    TGATCTAGAA AGACTTGTGT TAGCTGCAGG TCCTATCGGC CTCATGCAAG 
    CATGCCTTGA TGTAGCTGTT CCTTATGTTC GCCAAAGAGA GCAATTTGGC 
    CGTCCAATTG GTGAATTTCA GTTCATACAG GGGAAATTGG CAGATATGTA 
    CACCTCCTTG CAGTCATCAA GGTCATTTGT TTACTCGGTT GCTAGGGACT 
    GTGACAATGG TAAAGTTGAC CGCAAGGATT GTGCTGGTGT GATTCTCTTT 
    GCTGCTGAAA GGGCAACCCA GGTTGCACTT CAGGCAATAC AGTGTCTTGG 
    TGGCAACGGA TACATAAATG AGTACCCAAC TGGCCGATTG CTGAGAGATG 
    CAAAACTGTT TGAGATTGGA GCCGGTACTA GTGAGATAAG AAGAATGATA 
    ATTGGCCGCG AGCTCTTCAA AGAGGAGTGA AACTATTATT TTGGAAGCCA 
    GGTATCTGAT ATGTATAACT TGGGGAGGTG AGCATGATTT GGACAATTTG 
    TACACATCGT CCCTGATGTC CTATATCTGA TAATTTGTCC AAGATTTGTC 
    ATGACTTTGT ATATTTCCAA TTTAATAAGA AATAAAATGC ACCTTTCTTT

    Gene models with high sequence identity

    1. AT3G45300.1 [+] show detail - isovaleryl-CoA-dehydrogenase
      E-value: 0; Score: 660.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Acyl-CoA oxidase/dehydrogenase, type 1 6.8e-48
    HMMPfam Acyl-CoA dehydrogenase, N-terminal 6.8e-35
    HMMPfam Acyl-CoA oxidase/dehydrogenase, central domain 1.7e-19
    Gene3D Acyl-CoA dehydrogenase/oxidase, N-terminal 5.4e-37
    Gene3D Acyl-CoA oxidase/dehydrogenase, central domain 3.7e-35
    Gene3D Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal 2.1e-50
    HMMPanther ACYL-COA DEHYDROGENASE 3.1e-191
    HMMPanther ELECTRON TRANSPORT OXIDOREDUCTASE 3.1e-191
    PatternScan Acyl-CoA dehydrogenase, conserved site 0
    PatternScan Acyl-CoA dehydrogenase, conserved site 0
    superfamily Acyl-CoA dehydrogenase/oxidase 1.7e-88
    superfamily Acyl-CoA dehydrogenase/oxidase C-terminal 5.1e-50

    See the detailed result >

    AT3G45300.1

    Model type
    Protein coding
    Short Description
    isovaleryl-CoA-dehydrogenase
    Curator Summary
    Encodes isovaleryl-coenzyme a dehydrogenase. Mutants have increases in 12 seed free amino acids, accumulation of seed homomethionine and 3-isovaleroyloxypropyl-glucosinolate, with a concomitant decrease in seed 3-benzoyloxypropyl-glucosinolate.
    Computational Description
    isovaleryl-CoA-dehydrogenase (IVD); FUNCTIONS IN: isovaleryl-CoA dehydrogenase activity, ATP binding; INVOLVED IN: leucine catabolic process; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA dehydrogenase, conserved site (InterPro:IPR006089), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092); BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 4 (TAIR:AT3G51840.1); Has 45583 Blast hits to 45129 proteins in 2067 species: Archae - 559; Bacteria - 29477; Metazoa - 1687; Fungi - 835; Plants - 308; Viruses - 0; Other Eukaryotes - 12717 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR