K13202

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small) decreased length (PATO:0000574) (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13202

Determination of introduced cDNA(s)

J013089I06 - Rice Full-length cDNAs - Original: J013089I06

full reading [+] show sequence

GTCGGTTGGT TGGCTGGTTG GTCGGCGAAT TGCACATCTT GGGGCGACCG 
ATCGGCGGCC GGCGGGCGAA GCAACCAAGG CCCAAAAGGG AGGGAAAAAA 
CCTTGGTTGT GTGTGTGCCG CCGCGAGCCC GTGACGGCGC CCTCCGGCAC 
GCGATAGGGA GGATGCCGTA CTGCGTGGTC AGCCACGGCG ACCCATCGGC 
GGCGGCGGCG GCGGCCGGCG AGGAGGGAGA TGTGCGGATT TTCTACCAGA 
GATACGGCCA TGGCGGCACC AAGGTGCTCC TCATCATCGG GTTCGCGGGG 
ACGCACGAGT CGTGGGGCCC GCAGGTGAAG GGCCTGACGG GCGCCGTCGA 
GCCCGTCGAC GAGGAGGGCG CCGAGGTCTG CTGCTTCGAC AACCGCGGCA 
TTGGCCGGAG CTCCGTGCCG CCGCACAAAT CGCAGTACAC GTAATGCTCT 
GCTCTTTACC ACCCATTGAA TTCTCTGACA GAGACAGAGA TACTAGTCGA 
GTTCTTTCTA ATCTTCTCCC AACATCAAAT ATCCAAATAA AATCATTTCA 
TCTGCTCGAT TCTTCGCAGC ACGGTGATCA TGGCGAAGGA CGCGCTAGCA 
TTAATGGCTC ATCTAGGGTG GCGGAAAGCA CACGTTTTCG GTCACTCCAT 
GGGGTCCATG ATAGCTTCCA AGTTGGCCGC CATTGCGCCG GAGCGTGTCG 
CTTCGCTGGC GTTGCTCAAC ACCACCGGAG GTGGCTACCA ATGTATCCCC 
AAGATTGATT GGCAGACCAT ATCCCTCGCA TGTCGTTTTC TAAGAGCAAG 
AACTCCAGAG CAGAGAGCTG GTGTTGATCT TGATGTTCAT TACACGAGGG 
AGTACCTCGA TGAAATTGTT GGATCAAATA CCAGAAGACA AATGCTTTAC 
CAGGAATATG TGAAAGGTTT GTCATCATGT GGAATGCAAT CAAGACATGG 
ATATGAAGGA CAACTGAATG CATGTTGGAC GCATAAGCTT ACACAGAAAG 
AACTAGACCG GATTCGTTCA TCAGGTTTTC TTATTCTAGT TATACACGGA 
AGGGATGATG TTGTAGCTCA GTTGTATCAT GCAAGGAGAC TAGCAGAGAA 
GCTCCAGCCT GCTGCTAAAC TGGTTGAACT CCATGGAGGC CACCTGGTGA 
GCCACGAAAG AACAGCTGAG GTTAATATGT CCCTCATGGA GATGATAAAA 
GCATCAAAAT CAAATACAGA TCAGGGGGAA TGGTCAAACC TTCCTAAGAA 
GTCTGATGAT CTACTTCTTG CTGGATCAGA TAGTCGTCTT GCTAAACGAG 
AATGCAACAT CATCGTTATA TACAATCTAC TTGGGAAGTT GCAACTCATT 
TTGCTTTTCT TCTTTGGAGT ATTTTATATT ATTCTTGAGC ATGCTAGGAG 
GGTACTAAGA GTTTTGAAGC CTGTGAGAGT ATCAGCTACC AGCTTATAGT 
CAAACAAGGG ATTTTTATTT TCAAGGCTCT TTTCGACGTC TTCAGTTCCA 
TTTCTGAATT TTGCAGCAGC ACAGAGATTC TCGGTAACTA AGAATTTACT 
GCGGCATAGA AATTAGTCAG CGAATAATTG CAATATAAGG CCATTCATTC 
TTCGGGAAAG TGTGGATTTG AAGAGTTCTG ATTTGTATGG TATTTGTTGT 
ACAGGGTTAA AATTACAGGT TGGTCCTTCT AGGAATTGTT TGGTAATTTA 
TCTCTCCTTT TATTAATGTG GGAGAGAAAA TTGCCTGCAA TCTATTGAGG 
ATGTGTGTTG TCCAAAACAT AAATGGAGCA TACATTTTTG CAATGAAAAA 
TTCCTTTTCC ACTGATTTCA C

Gene models with high sequence identity

AT5G53050.3 [+] show detail - alpha/beta-Hydrolases superfamily protein
E-value: 1e-110; Score: 397.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Alpha/beta hydrolase fold-1	0.0000000000000011
superfamily	alpha/beta-Hydrolases	0.000000000039
superfamily	alpha/beta-Hydrolases	8.9e-30
HMMPanther	CARBOXYLESTERASE NP	0.00000000000029
HMMPanther	ALPHA/BETA HYDROLASE RELATED	0.00000000000029
HMMPanther	CARBOXYLESTERASE NP	2.1e-33
HMMPanther	ALPHA/BETA HYDROLASE RELATED	2.1e-33
Gene3D	no description	0.0000000011
Gene3D	no description	1.7e-29

See the detailed result >

AT5G53050.3

Model type: Protein coding
Short Description: alpha/beta-Hydrolases superfamily protein
Computational Description: alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G02340.1); Has 11083 Blast hits to 11081 proteins in 1482 species: Archae - 92; Bacteria - 8297; Metazoa - 245; Fungi - 229; Plants - 334; Viruses - 5; Other Eukaryotes - 1881 (source: NCBI BLink).
Link: InterPro Scan - TAIR