K13204

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13204

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13204

Determination of introduced cDNA(s)

  • J023131K07 - Rice Full-length cDNAs - Original: J023131K07

    full reading [+] show sequence

    Nucleotide sequence: J023131K07 - full reading 
    GAATTAGCAG GTCAATACCA GAGTCTCTCT AGCTACTTCT CCTGCTTGCT 
    ATAGCCCTGT GTTGCGCTAG GCTGTGTCAT GTAATGGATC ACGCTGGCAA 
    CACGGTCGCG AACGTGACGG TGGCGCAGCA GCCGCATTAC GGGCGGTCCG 
    TGTCGCCGCC GTCGAGGGTG TCGTCGTGCT CGCCGCCACC ACCTCCTGTC 
    GGCACCGCCT CCTTGCTGGT GGGCAACACG TCGTCGTCGT CGTCACCGAC 
    GACGACCGTC GTGCTGAGCC CGTGCGCCGC GTGCAAGGTG CTCCGCCGCC 
    GGTGCGCCGA CGGCTGCGTG CTGGCTCCTT ACTTCCCTCC TACCGAACCG 
    ACCAAGTTCA CTACCGCGCA CCGCGTGTTC GGCGCCAGCA ACATCATCAA 
    GCTCCTCCAG GAATTGCCGG AGAGCGCGCG GGCGGACGCG GTGAGCAGCA 
    TGGTGTACGA GGCGGAGGCG AGGCTGCGGG ACCCGGTGTA CGGGTGCGCG 
    GGGGCGGTGT GCCGGCTGCA GAAGGAGGCG AACGAGCTCA AGGTGCAGCT 
    CGCGCGCGCG CAGGCCGACC TGCTCAACGC GCGGGCGCAG CACGACAACC 
    TCGTCGCCCT CGTCTGCGTC GAGCTCGCGC ACCGCCGCCG GGACGACGAC 
    CAGCAGCTGG AATACCAGGC GCCGGCGCCG CCGCTGCCGC ACCCGGCGGA 
    GTACTGTAGC GGCGGCGCAG GCTTCGGCGC CACCGTGTAC CAGCCGTTCT 
    ACGACTCGGA CCTGGACTCG GCGGCGTGGG GCGAGCCCCA GCTATGGACG 
    TGATACAAAT TTGCATGGTC AGCGCGGCTA GCTAAGCTAA GCTAAGCTAC 
    CATACTCCGT ATTTGGCATG CAGGGTAATT AATAATCTAG AGCACTAGTA 
    GTAATTAAGT ACTGTAATTA GAAACAGATC AGTTTAAAGA AGGAACTATA 
    ATTAGTACCT GGCGGCTTAG CTAGTGTCGT GCTTCGAGTA CATGTAACAG 
    CAACGGTTAT ACATACTTCA GCCGGCCGGA ACAGTTTATG CTTGCTTTCA 
    GAGTGTTATG TTCTTCAGAT TTAAAACAAG ATCAGATATT TTGCAATG

    Gene models with high sequence identity

    1. AT1G07900.1 [+] show detail - LOB domain-containing protein 1
      E-value: 3e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Lateral organ boundaries, LOB 25.274
    HMMPfam Lateral organ boundaries, LOB 5.4e-40
    Coil coiled-coil 0

    See the detailed result >

    AT1G07900.1

    Model type
    Protein coding
    Short Description
    LOB domain-containing protein 1
    Computational Description
    LOB domain-containing protein 1 (LBD1); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 11 (TAIR:AT2G28500.1); Has 1035 Blast hits to 1030 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1035; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR