K13206

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13206

Determination of introduced cDNA(s)

  • J033120O07 - Rice Full-length cDNAs - Original: J033120O07

    full reading [+] show sequence

    Nucleotide sequence: J033120O07 - full reading 
    GTCGAGGCAG ACTGGACGCG GTCCCGGGCG CTGCTGCCGG CTGCCGCCGC 
    CTCCCCTCGG CGTCTCCTTC CCCCGCGGTT GGCTACCTCA AGGGGCTTCC 
    TCAGCGCGGT CACCTCCCTC CTCGGCGGTG AAGATTGCAG ATATTATGCC 
    GAACAAGAAG AAGAGAAGTG CAGAAGATGC TGCTTTGTAT GTGGAGAGTT 
    TATTGTTCGG TGATGATCCT AGTGATTCTG AAGCGGATGT CGACAAATAT 
    GATGCTAGCG ATTTGAAGGG GGCAATAAAC AAGGATGGCT CTAGTGATGA 
    AGAGGATTTC ACAGAGGAAG GCCTGAGTGC AAAAGAGGTG GCCTTAAGCA 
    TATCCAAATC CATCGTGTCC CTTATCTCTT CTGTTGATGG AAAGGTTCTA 
    TTTACTTGCT CAGGGACAAT GGTTGATCAT GTGGGTTCTG CAACTTGGAT 
    ACTCACCTCT GCTACTCTGG TTAGGAAATG TGACAATGAC TATGATGCTT 
    ATCAAGAGGG TGATGTTAAG ATTGAAGTAC TTCTGCACAA CAAAACAATC 
    ACTGAGGGGT TCTTAGCAAT GTGCAGTCTG CAGTACAATA TAGCTGTTGT 
    CACCATTGAG CCACAATTTG ATCTTCCTTT GGTGAAACTT CATGACGTTC 
    CTGTCTGTTA TTCCATGCTG TGTCGGCCTG TGATAGCTGT AGCTCGTAAC 
    TTTAAGTCAA AGACTTTACT AGTGAGATGT GGGGAGATGA CCCGTGAACG 
    TAGCGAATTG GACTGCGATG AGCTTTTGGT CTGCACTTGT CCTGTTAGTA 
    AGGTTTTCAT TGGGGGCCTT GTCATGGATT TGGAAAGGAG GATTCTCGGC 
    ATCACTTTTT ACGACAAGGA TACTGTTCCA TTCTTGCCTA TTGAGATTGC 
    GGTGAGATGC TTGGAACACT TCAAGAATTT CAGGACACTC AAACAACCAT 
    CTCTTTGCAT AAGGGGGCAA GCTATTCACA AGTTGGAAAT ATGCAATTTG 
    GAAAAAATAT GCTACATGTA TCCTGAGCTG TCTTCTGGTT CTGGAATTGT 
    GGTAGAGAAG ATATCAGAAG TGTTACCAGA AAATTGTAGC AGCATTGAGG 
    CTGGTGATAT CATCTGTAGT GTTGATGACA TTGTTCTCTA CTCTCTGTCT 
    CAGCTTACTT CGATATTTCT TGATAAAATG GCGGCTGCAA TGCCCACGCA 
    GGATAAAGTG ACTGTCCAGG CTGAAATACG AAGGCCCAGA GATAACACTA 
    AGTTTGTTGC AAAGCTGAAT ATAGGAATTG CTTCTGGTGA ACACAACAAT 
    TGCTTCAATA ACAGATGGCC ACTGCAGTGA AAGAAGCAAT ATTTTGGTGA 
    TAAATATTTG AACTGATGAA GGCTGACCCT TTTTTTTTTT GGGGAGAGAG 
    AGGGGGGGGG GGGGGGTTAA CATGCAAACC TATCTGCCAT TTGTCTTTGA 
    AGCCTCGGCT TTACTCCGAA TTTCTTAAAC CAGAAGTATC CCAATCCAAC 
    ACAACACACA TGCACTGTGG CATTAATGGG TAGGATAAAA CCTCCTCAGA 
    CAGATTGCTT ATGGTTTTAA TTTTCAGCTG TGAAGATGAG AACTTTCAAG 
    GGGATTCTTG ATCCATTTCA GGCATGTGTT GACATGAAAA GGCCTCTTCA 
    CTCCT

    Gene models with high sequence identity

    1. AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
      E-value: 5e-08; Score: 56.60

     

    InterPro Scan Digest

    See the detailed result >

    AT5G27660.1

    Model type
    Protein coding
    Short Description
    Trypsin family protein with PDZ domain
    Computational Description
    Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR