K13206

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13206

Determination of introduced cDNA(s)

  • J033120O07 - Rice Full-length cDNAs - Original: J033120O07

    full reading [+] show sequence

    Nucleotide sequence: J033120O07 - full reading
    GTCGAGGCAG ACTGGACGCG GTCCCGGGCG CTGCTGCCGG CTGCCGCCGC 
    CTCCCCTCGG CGTCTCCTTC CCCCGCGGTT GGCTACCTCA AGGGGCTTCC
    TCAGCGCGGT CACCTCCCTC CTCGGCGGTG AAGATTGCAG ATATTATGCC
    GAACAAGAAG AAGAGAAGTG CAGAAGATGC TGCTTTGTAT GTGGAGAGTT
    TATTGTTCGG TGATGATCCT AGTGATTCTG AAGCGGATGT CGACAAATAT
    GATGCTAGCG ATTTGAAGGG GGCAATAAAC AAGGATGGCT CTAGTGATGA
    AGAGGATTTC ACAGAGGAAG GCCTGAGTGC AAAAGAGGTG GCCTTAAGCA
    TATCCAAATC CATCGTGTCC CTTATCTCTT CTGTTGATGG AAAGGTTCTA
    TTTACTTGCT CAGGGACAAT GGTTGATCAT GTGGGTTCTG CAACTTGGAT
    ACTCACCTCT GCTACTCTGG TTAGGAAATG TGACAATGAC TATGATGCTT
    ATCAAGAGGG TGATGTTAAG ATTGAAGTAC TTCTGCACAA CAAAACAATC
    ACTGAGGGGT TCTTAGCAAT GTGCAGTCTG CAGTACAATA TAGCTGTTGT
    CACCATTGAG CCACAATTTG ATCTTCCTTT GGTGAAACTT CATGACGTTC
    CTGTCTGTTA TTCCATGCTG TGTCGGCCTG TGATAGCTGT AGCTCGTAAC
    TTTAAGTCAA AGACTTTACT AGTGAGATGT GGGGAGATGA CCCGTGAACG
    TAGCGAATTG GACTGCGATG AGCTTTTGGT CTGCACTTGT CCTGTTAGTA
    AGGTTTTCAT TGGGGGCCTT GTCATGGATT TGGAAAGGAG GATTCTCGGC
    ATCACTTTTT ACGACAAGGA TACTGTTCCA TTCTTGCCTA TTGAGATTGC
    GGTGAGATGC TTGGAACACT TCAAGAATTT CAGGACACTC AAACAACCAT
    CTCTTTGCAT AAGGGGGCAA GCTATTCACA AGTTGGAAAT ATGCAATTTG
    GAAAAAATAT GCTACATGTA TCCTGAGCTG TCTTCTGGTT CTGGAATTGT
    GGTAGAGAAG ATATCAGAAG TGTTACCAGA AAATTGTAGC AGCATTGAGG
    CTGGTGATAT CATCTGTAGT GTTGATGACA TTGTTCTCTA CTCTCTGTCT
    CAGCTTACTT CGATATTTCT TGATAAAATG GCGGCTGCAA TGCCCACGCA
    GGATAAAGTG ACTGTCCAGG CTGAAATACG AAGGCCCAGA GATAACACTA
    AGTTTGTTGC AAAGCTGAAT ATAGGAATTG CTTCTGGTGA ACACAACAAT
    TGCTTCAATA ACAGATGGCC ACTGCAGTGA AAGAAGCAAT ATTTTGGTGA
    TAAATATTTG AACTGATGAA GGCTGACCCT TTTTTTTTTT GGGGAGAGAG
    AGGGGGGGGG GGGGGGTTAA CATGCAAACC TATCTGCCAT TTGTCTTTGA
    AGCCTCGGCT TTACTCCGAA TTTCTTAAAC CAGAAGTATC CCAATCCAAC
    ACAACACACA TGCACTGTGG CATTAATGGG TAGGATAAAA CCTCCTCAGA
    CAGATTGCTT ATGGTTTTAA TTTTCAGCTG TGAAGATGAG AACTTTCAAG
    GGGATTCTTG ATCCATTTCA GGCATGTGTT GACATGAAAA GGCCTCTTCA
    CTCCT

    Gene models with high sequence identity

    1. AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
      E-value: 5e-08; Score: 56.60

     

    InterPro Scan Digest

    See the detailed result >

    AT5G27660.1

    Model type
    Protein coding
    Short Description
    Trypsin family protein with PDZ domain
    Computational Description
    Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR