K13214

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13214

Determination of introduced cDNA(s)

J033069E14 - Rice Full-length cDNAs - Original: J033069E14

full reading [+] show sequence

GGTGCTCTGG AGAAGCCATT GCACAATGAT GTTACAGAGG CTGTTTTGAG 
TCTTCACAAT GCTGGCGGGT AGCAACTGTG GTAGGTAGTG GGAGTTCCTA 
CCTACCCCTC CCTGTCTTCC TACTAATTTG GTGGTGCGCA TCATGGGTTC 
AAGGAGCAAT CCGGCGGTTT GACTTCTCCG TCCGCACCTA CTCTAGCCTT 
TGTTCAGTGG TACGAGGCGC CGCGCGAGCC TGCCGGAATG GCCGCGGCGT 
CGTCTCCGGC GGCGGCCATC ACCTGCCGAG CGGCGGTGGC GTGGGCGCCC 
GGTCAGGCGC TGGTGATGGA GGAGGTGGAG GTGGCGCCGC CGGAGGCCAT 
GGAGATCCGC GTCAAGGTCG TCTCCACCTC CATCTGCCGC AGTGACGTCA 
CCCAGTGGCA ATCCACGGCT CAAACCGATC TGTTCCCCAG AATTTTCGGG 
CACGAAGCAT CCGGTGTGGT TGAGAGTGTT GGTGAAGGTG TGACCGAGTT 
CGAAGTGGGA GACCATGTGC TCACCGTCTT CATCGGAGAG TGCATGAGCT 
GCAAGCACTG CGTTTCAGGG AAGAGCAACA TGTGCCAGAA GCTCGGCCTG 
GAGAGGAGGG GTGTCATGCA CAGCGATCAG AAGACCCGCT TCTCGCTCAG 
GGGGAAACCT GTGTACCATT ACTGTGCAGT GTCAAGCTTC AGCGAGTACA 
CGGTTGTGCA CTCCGGTTGC GCGGTGAAGG TCGGCCCAAC CGTGCCGATG 
GACAGGATAT GCCTGCTGAG CTGTGGTGTA TCTGCAGGGC TTGGTGCAGC 
CTGGAAGGTT GCTGATATCT CGAAGGGGTC GAGTGTGGTT ATATTTGGCC 
TTGGAACTGT AGGGCTTTCT GTTGCTCAAG GTGCTAAGCT GCGCGGGGCT 
TCTATAATTA TCGGTGTTGA TACTAATCCT GAAAAGCAAG AAAAGGGGAA 
AGCTTTTGGT GTCACAGATT TTATTAATCC AGAAGAATTG AATGAACCTG 
TTCAGCAGGT GGTGAAGCGG CTGACCAATG GAGGTGCAGA TTACTCTTTT 
GAGTGCGTGG GTGATACAGG AGTAGTGTCG ACTGCACTGC AATCATGTTC 
TGATGGTTGG GGGCTGACTG TAACTCTTGG TGTGCCAAAA GCAAAGCCAG 
AGGTTTCTGC TCATTATGCA CTACTTCTGT CTGGAAGAAC ATTGAAGGGG 
TCTTTGTTTG GAGGATGGAG ACCTAAATCT GATCTACCTT TGTTAGTGGA 
CAAGTATGCA AACAAGGAAA TCCAAGTCGA TGACCTTGTT ACACATGATT 
TGTCATTCGA TTACATCAAC AAGGCACTTG AACTGATGCT AGAAAACAAG 
TGTTTGCGAT GTGTGATTCA CATGCCTCAG TGACAGGGTT GGACAACTAA 
GTGTTATCGT ATCTCTACAA TTTTTTCGCT TTATCTCAGT CGTGAAGTTT 
TCATCAGCAA ATCAGATTAT CACATCATTC TATGTTTCCA CCTTGGAAGT 
TTTGATGCTG TCTAACTTTG TGTACCTATC TCAAGAATTA TTCATGCTAT 
TTATCTTGCT GTAAAATTAG TTTGTAATGA CTGCAATTTT GTATTGATGT 
TCCATGTATA GGCCAAGATC TATCTTCTTC CAGAGCTTCC TGCTTCAAAT 
GAATCATGTA AAACTGAAGG ACAGCGTAAA GGAAATGAAA TTACATTCAC 
TGATTTTCAT CCGTC

Gene models with high sequence identity

AT5G24760.1 [+] show detail - GroES-like zinc-binding dehydrogenase family protein
E-value: 4e-147; Score: 518.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.3e-61
PatternScan	Alcohol dehydrogenase, zinc-containing, conserved site	0
superfamily	GroES-like	6.4e-68
superfamily	NAD(P)-binding domain	5.2e-52
superfamily	GroES-like	6.5e-13
HMMPanther	Alcohol dehydrogenase superfamily, zinc-containing	3.7e-95
HMMPfam	Alcohol dehydrogenase GroES-like	1e-23
HMMPfam	Alcohol dehydrogenase, zinc-binding	7e-23

See the detailed result >

AT5G24760.1

Model type: Protein coding
Short Description: GroES-like zinc-binding dehydrogenase family protein
Computational Description: GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase 1 (TAIR:AT1G77120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR