K13217

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13217

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13217

Determination of introduced cDNA(s)

  • J023010H01 - Rice Full-length cDNAs - Original: J023010H01

    full reading [+] show sequence

    Nucleotide sequence: J023010H01 - full reading 
    GAATAATGGA GGCGGCGGCT AGAGGCAACA AGAAGCTGCA GGAGAGGGTG 
    CCCATCCGGC GCACCGCGTG GAGGCTCGCC GACCTCGCCA TCCTCTTCCT 
    CCTCCTCGCC CTCCTCCTCC ACCGCGTCCT CCACGACAGC GGCGCGCCAT 
    GGCGGCGCGC CGCGCTCGCC TGCGAGGCGT GGTTCACCTT CATGTGGCTG 
    CTCAACGTGA ACGCCAAGTG GAGCCCCGTC CGTTTCGACA CGTTCCCGGA 
    GAACCTCGCC GAAAGGATCG ACGAGCTCCC GGCGGTGGAC ATGTTCGTGA 
    CGACGGCGGA CCCGGTGCTG GAGCCGCCGC TGGTGACCGT GAACACGGTG 
    CTGTCGCTGC TCGCCCTCGA CTACCCGGCC GCCGGCGAGA AGCTGGCGTG 
    CTACGTCTCC GACGACGGGT GCTCGCCGCT GACGTGCTAC GCGCTGCGGG 
    AGGCCGCCCG GTTCGCCAGG ACGTGGGTGC CCTTCTGCCG GCGGCACGGC 
    GTCGCCGTCA GGGCGCCCTT CCGGTACTTC TCCTCCACGC CGGAGTTCGG 
    CCCGGCGGAT GGCAAGTTCT TGGAGGACTG GACATTCATG AAGAGCGAGT 
    ATGAGAAGTT GGTCCACCGG ATCGAGGACG CCGATGAGCC TTCCCTTCTG 
    CGGCACGGCG GTGGTGAGTT CGCAGAGTTT CTGGATGTTG AGAGGGGGAA 
    CCACCCTACT ATCATAAAGG TTCTGTGGGA TAACAACAGG AGCAGGACAG 
    GAGATGGCTT CCCTCGTCTG ATATACGTCT CAAGGGAGAA GAGCCCCAAC 
    CTACACCATC ACTACAAGGC TGGCGCCATG AATGCCCTGA CAAGGGTGTC 
    AGCACTGATG ACCAACGCCC CATTCATGCT AAACCTAGAC TGCGACATGT 
    TTGTAAACAA CCCCCGGGTC GTCCTCCATG CCATGTGCCT TCTGTTAGGT 
    TTTGACGATG AGATCAGCTG CGCGTTTGTT CAGACGCCGC AGAAATTCTA 
    CGGTGCCTTG AAGGATGATC CTTTCGGGAA CCAGCTGGAA GTTAGTTTGA 
    TGAAAGTTGG ACGTGGGATT GCAGGGCTTC AGGGCATATT TTATTGTGGA 
    ACAGGCTGCT TTCACCGCAG AAAAGTCATT TACGGCATGA GGACAGGGCG 
    AGAAGGCACC ACAGGTTATT CATCTAACAA GGAGCTCCAT AGTAAATTCG 
    GAAGTTCAAA TAATTTTAAG GAATCAGCCA GGGATGTCAT TTATGGGAAC 
    TTGTCAACAG AGCCAATAGT AGATATATCA AGTTGCGTTG ATGTTGCCAA 
    AGAAGTAGCT GCCTGCAACT ACGAGATTGG CACATGTTGG GGTCAGGAGG 
    TTGGTTGGGT CTATGGATCA CTGACAGAAG ACGTGTTGAC CGGACAACGG 
    ATCCATGCAG CGGGTTGGAG ATCCACGCTG ATGGAAATCG AACCACCAGC 
    ATTCATGGGT TGTGCACCAA ATGGAGGGCC CGCCTGCCTA ACCCAGTTGA 
    AGAGATGGGC ATCAGGTTTT TTAGAAATAC TCATCAGTCG GAATAACCCA 
    ATCCTCACAA CCACATTTAA GAGTCTCCAA TTCCGACAAT GCCTTGCATA 
    CCTGCACAGC TATGTGTGGC CTGTGAGGGC ACCTTTCGAA TTGTGCTATG 
    CATTGTTGGG GCCTTATTGC TTACTATCAA ACCAATCCTT CTTGCCAAAG 
    ACATCAGAAG ACGGTTTCTA CATCGCATTA GCTCTATTCA TTGCCTATAA 
    CACATACATG TTCATGGAGT TCATAGAGTG TGGGCAGTCT GCACGTGCAT 
    GTTGGAACAA CCACAGGATG CAACGGATCA CCTCAGCTTC TGCTTGGCTA 
    CTGGCATTTC TTACCGTCAT CCTCAAGACC TTAGGCTTCT CCGAGACTGT 
    GTTCGAGGTC ACCCGCAAAG ACAAGAGCAC ATCAGATGGT GATTCCAACA 
    CCGATGAGCC TGAGCCAGGG AGGTTCACCT TCGACGAATC GACGGTGTTC 
    ATTCCCGTGA CAGCACTTGC AATGTTAAGT GTCATTGCAA TCGCTGTAGG 
    AGCATGGAGG GTGGTTTTGG TGACAACGGA AGGCTTGCCC GGTGGCCCTG 
    GTATCAGTGA ATTCATCTCC TGTGGGTGGC TGGTGCTGTG CTTCATGCCA 
    TTGCTGAGAG GTCTAGTGGG AAGTGGTCGA TATGGCATTC CTTGGAGTAT 
    CAAGATGAAG GCCTGCTTGC TTGTTGCTAT ATTCTTGCTC TTCTGCAAAA 
    GAAATTAATT GCAGCTGGTG TGCAGCAACA ATTAGTCCAT ACTATTATTT 
    GAGCATGCAA ACACTAGGTT TCATCTTCAT ATTATTATGT CCGCAAACGT 
    TGACTAAGCT CTAGAAAAGG GAACAATTCA ATCACT

    Gene models with high sequence identity

    1. AT2G32540.1 [+] show detail - cellulose synthase-like B4
      E-value: 2e-167; Score: 587.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cellulose synthase 6.8e-79
    HMMPfam Cellulose synthase 2.3e-55

    See the detailed result >

    AT2G32540.1

    Model type
    Protein coding
    Short Description
    cellulose synthase-like B4
    Curator Summary
    encodes a gene similar to cellulose synthase
    Computational Description
    cellulose synthase-like B4 (CSLB04); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like B3 (TAIR:AT2G32530.1); Has 2375 Blast hits to 2288 proteins in 474 species: Archae - 7; Bacteria - 756; Metazoa - 0; Fungi - 5; Plants - 1590; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR