K13224

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13224

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13224

Determination of introduced cDNA(s)

  • J023095I04 - Rice Full-length cDNAs - Original: J023095I04

    full reading [+] show sequence

    Nucleotide sequence: J023095I04 - full reading 
    GTGCTCTTAT CGAAAATTAA AAAAAGAGAG AGAAATAAAA GGGGATCGAT 
    CCGCTCTTGT AGTTGTAGAG CGTTCCATTC CACTTCCACA GCAGTGGACT 
    CAGTGAGCAA CGGAGGAAGC AACGATGCGC TCCCGATCTC TCCTCCTCGT 
    CGCCCTCGCC ACCCTTCTTC TCCACGCCTC CGCCTCCGCC TCCGACGACG 
    ACCTCGACTA CCTCATCGAC AACGCCGACG ACATCCCCGC CAACGACCCC 
    GACGGCTGGC TCCAGGAGGG CTCCCCCGAC GACGACGACG ACGACGACCT 
    CTTCCACCAT GGCCAGGCCC AGGACCATCC CATAGATGAG ACCCACGTCT 
    TCCTCCTCTC CGCCGCCAAC TTCTCCGACT TCCTCGCCTC CCACCGCCAT 
    GTCATGGTCG AGTTCTACGC CCCCTGGTGC GCCCATTGCC AGGCGCTCGC 
    CCCAGACTAC GCCGCCGCCG CCGCCGACCT CTCCCCTCTT GCCCATCAAG 
    TCGCCCTCGC CAAGGTCGAC GCCACCGAGG ACACTGATCT CGCCCAGAAG 
    TACGACGTCC AGGGCTTCCC CACCATCCTC TTCTTCATCG ACGGCGTTCC 
    CAAGGACTAC AACGGCGCAA GAACCAAGGA AGCCATCGTG TCGTGGGTCA 
    ACAAGAAGCT AGCTCCCGGG GTGCAAAACA TCACCACCGT CGACGAGGCG 
    GAGAAGATAC TCACCGGGGA GGACAAGGCC ATTCTTGCCG TCCTCGACTC 
    CCTATCGGGT GCTCACAGTG ATGAGATTGC TGCTGCTTCG AGGCTGGAAG 
    ATGCTATCAA CTTTTACCAG ACTTCCAATC CTGATGTTGC CAAGCTTTTT 
    CACCTTGACC CAGCGGCCAA GCGCCCGTCC TTAGTCCTGC TCAAGAAACA 
    AGAGGAGGAG AAGTTGACCT TCTATGATGG GCCATTCAAA GCATCTGCAA 
    TTGCCGATTT TGTATCTGCA AACAAGCTTC CGTTGGTCAA CACCCTCACA 
    CAGGAAACTG CTCCTTCCAT TTTTGACAAT CCAATCAAGA AGCAGATTTT 
    ACTATTTGTT GTTGCAAACG AATCGTCGAA ATTTCTGCCC ATCTTTAAGG 
    AAGCATCAAA ATCATTCAAG GGGAAGCTTT TGTTTGTCTT TGTGGAGCGT 
    GACAATGAGG AAGTAGGTGA ACCAGTTGCC AACTACTTTG GTATTACTGG 
    ACAAGAGACC ACAGTTCTTG CTTACACTGG GAATGAAGAT GCTAGGAATT 
    TTTTCCTTGA TGGTGAAATA TCGGTAGAGA ATATTAAGAG ATTTGCTGAG 
    GATTTCTTAG AGGAAAAGCT CACACCGTTC TACAAGTCTG AACCTGTACC 
    TGAATCTAAT GAAGGAGATG TCAAAATTGT TGTTGGAAAA AACCTAGATC 
    AGATTGTTTT GGATGAATCA AAAGATGCCC TTTTGGAGAT ATATGCACCA 
    TGGTGTGGGC ATTGTCAGGA ACTGGAGCCT ACCTACAACA AGCTAGGAAA 
    GCATCTCCGT GGCATTGACT CCCTTGTAAT AGCTAAAATG GATGGCACTG 
    CCAATGAGCA TCCACGTGCA AAGCCTGATG GATTCCCAAC GATCCTCTTT 
    TATCCAGCAG GAAAGAAAAG TTTTGAGCCT ATTACTTTTG AGGGGGACCG 
    TACGGTGGTG GAGATGTACA AGTTTATCAA GAAGCACGCT AGCATCCCTT 
    TCAAACTGAA GCGGCCGGAT TCGTCAGCAA CGAAAACAGA GAAGGATCAG 
    AGCACAGCTT CAACTAATTT GAGGGGGGAG AGGAGTTCCG GTACAAATTT 
    CAAGGATGAG TTGTAGTCTT GTAGAGCGGC ATTGGTGCAA CCTTTGAACA 
    AGGCAACGAC GCTCTCTAGA AAAGGCTGTT TCTTTTTATG TATGCGAGGG 
    CCTGAGGGGC AGCAGAAAGG AATCCAAAGT TGGTTTCTAC TTTCTATAGA 
    GAGTATTCCG GTAAGGAGTT AGCTTGGACG ATGTGCATGT TGAGATGAAC 
    GAATTGAATC GAATCGAATG GAATAAAAGC AAACGAAACG GCTTCG

    Gene models with high sequence identity

    1. AT5G60640.1 [+] show detail - PDI-like 1-4
      E-value: 1e-164; Score: 577.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Thioredoxin-like subdomain 6.5e-06
    FPrintScan Thioredoxin-like subdomain 6.5e-06
    FPrintScan Thioredoxin-like subdomain 6.5e-06
    HMMTigr Protein disulphide isomerase 9.9e-197
    HMMTigr Disulphide isomerase 3.7e-45
    HMMTigr Disulphide isomerase 7.3e-33
    ProfileScan Thioredoxin-like 15.95
    ProfileScan Thioredoxin-like 12.753
    PatternScan Thioredoxin, conserved site 0
    PatternScan Thioredoxin, conserved site 0
    Gene3D Thioredoxin fold 4.4e-34
    Gene3D Thioredoxin fold 1.5e-21
    Gene3D Thioredoxin fold 5.3e-21
    HMMPanther PROTEIN DISULFIDE ISOMERASE 4.1e-108
    superfamily Thioredoxin-like fold 2.3e-32
    superfamily Thioredoxin-like fold 3.5e-27
    superfamily Thioredoxin-like fold 1.1e-16
    superfamily Thioredoxin-like fold 1.4e-16
    HMMPfam Thioredoxin domain 6.5e-29
    HMMPfam Thioredoxin domain 1.1e-19

    See the detailed result >

    AT5G60640.1

    Model type
    Protein coding
    Short Description
    PDI-like 1-4
    Curator Summary
    Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
    Computational Description
    PDI-like 1-4 (PDIL1-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-3 (TAIR:AT3G54960.1); Has 27268 Blast hits to 18617 proteins in 2977 species: Archae - 300; Bacteria - 12440; Metazoa - 5251; Fungi - 1704; Plants - 2409; Viruses - 19; Other Eukaryotes - 5145 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR