K13227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K13227

Determination of introduced cDNA(s)

  • J033032I07 - Rice Full-length cDNAs - Original: J033032I07

    full reading [+] show sequence

    Nucleotide sequence: J033032I07 - full reading
    CTTTTGTATC ACCTATTTCA AGTGGGCTGC CTGCTCCAAT AGCTGCTCCA 
    GCTAAAGGCC CCTTTGTTCC TCCTGAGAAC CTAATAAGGT TGAAGTCTGA
    GACTGGCTGG AAAGGTTCAG CAGCCACAAG CGCATTTCGC CCAGCGGAGC
    CAAGGAAAAT TTTTGAGATG ACTCTCAGTG CATCTGGCAT TCTGGTTTCT
    GATGCTGCAG GGAAAAACCG CCCAGCACTT GACATTGACT TAAATGTTGC
    AGATGAGCAA TTTCTTGAGG AAGACGTCTC TCAGAGTTCT GTTCAGACAA
    CTGGTTCTGA ATCTGGCAAC ACTAGAAGAA GCAATGGTCC TGTACGTAGT
    GTTGGCTTTG AGCTTGACTT GAATAGGGCC GATGAAGTTG CAGAGAATGG
    GCAAATTGTG TCTAACACTA ACCACAGGGT TGAAGTCCCA TTATTATCAA
    GACCATTACC TGGAGTTTTC TCTAGTTCCG ATGCAAATAG CTCAAGGGAT
    TTTGATCTTA ATAATGGACC AACTCTTGAT GAAGCTGGTA CGGAACATGC
    ACCAAGGAGT CTGTCATCTA AAAATACCAG TAGCATACCA TTCCTACCTC
    AAGTCGCTAG CATGAGAATG AACAGTGCTG AAATGAGTAA CATATCACCA
    TGGTTTGCTT CTGCCAATGC TTGTGCTCCT GTAGCTATAA AGTCGTTTTT
    ACCTTCTAGA GGAGAACAGC CTCACCCAGT CGAGACAGCA GCTGGAAGTG
    GAACCCAGAG GATCATCACA TCGATGGCAG ATGGTGTCCA ACATGGAAGT
    GATCCCAGCC GGACTCCAGT TATTTCAACT TCACCGACTA TGATGTTTCA
    CCCTCCTGCT TATCAGTATG CAGGATTCCC TTTTACTCCT AGTGTCCACC
    TTCAAGCACC GGGGTTTTCA ATTGGGTCTA CATCATATGC GAATTCTGCA
    CCTGGAGGAA TTCCTTATTT CCCTACAATT GCTCCGACGC TTGTTGGCCC
    AGCAGGTGCA TTACCTGCTC AGCATACTCG ACAATATGCA ATAAACCTCC
    CTGAAGGAAG CAGCACTGTT GGACATGACA ATAATCGGAA ATGGGGAAGA
    CAGGGTCTTG ATCTTAATTC TGGCCCTGGA AGTGTGGATG TAGAAGTGAA
    GGACGATAGA GTAACTTTAC CAGTTAGACA AAATTTTATT GCGCCACCAC
    ATGCCTTTGT GGACGAGCAT ACGAGAATGT ATCAAATGCC TCCAGGTGTT
    GGAATAAAGA GGAAGGAACC AGAGGGCAGT TGGGATGCCG AACGATCTTC
    ATACAAACAA TTGTCATGGC AATGAGCTTT TGCTGGTATC ATTTCTCAGC
    GACTTCGGCA TCCAATGAGC TTAGGCAGCT GCATGTGGTA CTTGGGTTCG
    TGTACTGCAC CCTTGCTGGA ATATACAATT CATACATGGA TACTTTCCTT
    GTGATGATGT GAATGTGAGA GGAACGATGC TTTGATGTAA TTGCTGTAAA
    TGTTCATATT TCATACTTTC CTGGAAACAA TTTTCCTTGG CATTGGCAGT
    TGCTTTGCTA GATTTTCTTA GCTGTCAGGG ACTCAGGCAT GCTTCTAATT
    TGCTTGGGAG GGTATGACTG GAGATGGAAA CGGTATAGGT CCTGGGCCTC
    AAGAAACATC TGAAGCCGCT GTAATTAGGT TCAGTTTGTT TGTTTTTAGT
    TTCTTATGAC AGACCAATTT TCTCTTTTTG GAGC

    Gene models with high sequence identity

    1. AT3G48060.1 [+] show detail - BAH domain ;TFIIS helical bundle-like domain
      E-value: 9e-79; Score: 291.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G48060.1

    Model type
    Protein coding
    Short Description
    BAH domain ;TFIIS helical bundle-like domain
    Computational Description
    BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48050.2); Has 5615 Blast hits to 3296 proteins in 434 species: Archae - 6; Bacteria - 1034; Metazoa - 2145; Fungi - 615; Plants - 463; Viruses - 15; Other Eukaryotes - 1337 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR