K13227

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13227

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K13227

Determination of introduced cDNA(s)

  • J033032I07 - Rice Full-length cDNAs - Original: J033032I07

    full reading [+] show sequence

    Nucleotide sequence: J033032I07 - full reading 
    CTTTTGTATC ACCTATTTCA AGTGGGCTGC CTGCTCCAAT AGCTGCTCCA 
    GCTAAAGGCC CCTTTGTTCC TCCTGAGAAC CTAATAAGGT TGAAGTCTGA 
    GACTGGCTGG AAAGGTTCAG CAGCCACAAG CGCATTTCGC CCAGCGGAGC 
    CAAGGAAAAT TTTTGAGATG ACTCTCAGTG CATCTGGCAT TCTGGTTTCT 
    GATGCTGCAG GGAAAAACCG CCCAGCACTT GACATTGACT TAAATGTTGC 
    AGATGAGCAA TTTCTTGAGG AAGACGTCTC TCAGAGTTCT GTTCAGACAA 
    CTGGTTCTGA ATCTGGCAAC ACTAGAAGAA GCAATGGTCC TGTACGTAGT 
    GTTGGCTTTG AGCTTGACTT GAATAGGGCC GATGAAGTTG CAGAGAATGG 
    GCAAATTGTG TCTAACACTA ACCACAGGGT TGAAGTCCCA TTATTATCAA 
    GACCATTACC TGGAGTTTTC TCTAGTTCCG ATGCAAATAG CTCAAGGGAT 
    TTTGATCTTA ATAATGGACC AACTCTTGAT GAAGCTGGTA CGGAACATGC 
    ACCAAGGAGT CTGTCATCTA AAAATACCAG TAGCATACCA TTCCTACCTC 
    AAGTCGCTAG CATGAGAATG AACAGTGCTG AAATGAGTAA CATATCACCA 
    TGGTTTGCTT CTGCCAATGC TTGTGCTCCT GTAGCTATAA AGTCGTTTTT 
    ACCTTCTAGA GGAGAACAGC CTCACCCAGT CGAGACAGCA GCTGGAAGTG 
    GAACCCAGAG GATCATCACA TCGATGGCAG ATGGTGTCCA ACATGGAAGT 
    GATCCCAGCC GGACTCCAGT TATTTCAACT TCACCGACTA TGATGTTTCA 
    CCCTCCTGCT TATCAGTATG CAGGATTCCC TTTTACTCCT AGTGTCCACC 
    TTCAAGCACC GGGGTTTTCA ATTGGGTCTA CATCATATGC GAATTCTGCA 
    CCTGGAGGAA TTCCTTATTT CCCTACAATT GCTCCGACGC TTGTTGGCCC 
    AGCAGGTGCA TTACCTGCTC AGCATACTCG ACAATATGCA ATAAACCTCC 
    CTGAAGGAAG CAGCACTGTT GGACATGACA ATAATCGGAA ATGGGGAAGA 
    CAGGGTCTTG ATCTTAATTC TGGCCCTGGA AGTGTGGATG TAGAAGTGAA 
    GGACGATAGA GTAACTTTAC CAGTTAGACA AAATTTTATT GCGCCACCAC 
    ATGCCTTTGT GGACGAGCAT ACGAGAATGT ATCAAATGCC TCCAGGTGTT 
    GGAATAAAGA GGAAGGAACC AGAGGGCAGT TGGGATGCCG AACGATCTTC 
    ATACAAACAA TTGTCATGGC AATGAGCTTT TGCTGGTATC ATTTCTCAGC 
    GACTTCGGCA TCCAATGAGC TTAGGCAGCT GCATGTGGTA CTTGGGTTCG 
    TGTACTGCAC CCTTGCTGGA ATATACAATT CATACATGGA TACTTTCCTT 
    GTGATGATGT GAATGTGAGA GGAACGATGC TTTGATGTAA TTGCTGTAAA 
    TGTTCATATT TCATACTTTC CTGGAAACAA TTTTCCTTGG CATTGGCAGT 
    TGCTTTGCTA GATTTTCTTA GCTGTCAGGG ACTCAGGCAT GCTTCTAATT 
    TGCTTGGGAG GGTATGACTG GAGATGGAAA CGGTATAGGT CCTGGGCCTC 
    AAGAAACATC TGAAGCCGCT GTAATTAGGT TCAGTTTGTT TGTTTTTAGT 
    TTCTTATGAC AGACCAATTT TCTCTTTTTG GAGC

    Gene models with high sequence identity

    1. AT3G48060.1 [+] show detail - BAH domain ;TFIIS helical bundle-like domain
      E-value: 9e-79; Score: 291.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G48060.1

    Model type
    Protein coding
    Short Description
    BAH domain ;TFIIS helical bundle-like domain
    Computational Description
    BAH domain ;TFIIS helical bundle-like domain; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: BAH domain ;TFIIS helical bundle-like domain (TAIR:AT3G48050.2); Has 5615 Blast hits to 3296 proteins in 434 species: Archae - 6; Bacteria - 1034; Metazoa - 2145; Fungi - 615; Plants - 463; Viruses - 15; Other Eukaryotes - 1337 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR