K13235

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13235

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13235

Determination of introduced cDNA(s)

  • J023040J23 - Rice Full-length cDNAs - Original: J023040J23

    full reading [+] show sequence

    Nucleotide sequence: J023040J23 - full reading
    GGTCTCGGCT TCCTCCTTCC TCATCCGTCT CCCACTTGTC GCTCGAGCTC 
    GCCTCCCAAA CCCTACCTCC TCCTCATATA CCTCTAGGTC TAGGTCTAGG
    GCCCTCCTCC TCCTCCCCGC CTCCTCCCCT CTTCGCGCCT TCTGCCCCGC
    CTCCCGCCGC CCCTCGCCCG CCACCTGCTC CGCCGCCTAC GCCTCCTCCT
    CCATGGCCAC CGACGACAAC CCGCTCCTCG CCGACTTCGA CTTCCCGCCC
    TTCGACCGCG TCGAGCCCAT CCACGTCCGC CCCGCCGTCC GCACGCTCCT
    CGCCCGCCTC GAGGGCGAGC TCACCGACCT CGAGAAGGGC GTGCAGCCCA
    CCTGGGGGAA GCTGGTCGAG CCGCTCGAGC GGATCGTCGA CAGCCTCGAG
    GTCGTCTGGG GCACCGTCGA CCACCTCAAG GCCGTCAAGG ACTCTTCCGA
    CCTCCGCGCC GCCGTCGAGG ACGTTCAGCC TGACAAAGTC AAATTCCAAC
    TAAGGCTGGG CCAGAGCAAG CCTATATACC AAGCTTTCAA CGCCATAAGG
    AATTCTTCAG ACTGGGAAAC CCTCAGTGAG GCTCGCAAGC GTATAGTAGA
    AGCCCAAATC AAGGAAGCCG TTCTAAGTGG AGTCGCACTT GAGGATGAAC
    AGAGGGAGAA ATTTAATCAA ATCGAGCAGG AGCTTGAGAA GTTAACACAA
    AAGTTCAGTG AAAATGTGCT GGATGCAACT AAGAAATTTG AGAAATTAAT
    TACTGATAAG AATGAAATTG ATGGGTTACC TGCCACAGCA CTTGGCTTAG
    CAGCACAGAC TGCCGCGTCA AAGGGTCATG AAAATGCTTC GGCTGAAAAC
    GGACCATGGA TCATCACATT GGATGCGCCA AGCTATATTG CTGTTATGCA
    GCATGCACGG AACAGAGCAC TTCGTGAAGA AGTTTATCGT GCTTACCTAA
    CCCGTGCCTC TAGTGGCGAC CTTGATAACA CCAATATCAT CAGTCAAATT
    CTAAAGTTGA GGCTGGAGAA GGCTAAGCTA CTCGGCTACA AGAACTATGC
    TGAGGTAAGC ATGGCTCAGA AAATGGCAAC TGTTGACCGT GTAGAAGAGC
    TTCTTGAGAA ACTCCGTGCT GCCTCCTGGG ATCATGCTGT TAAAGATATG
    GAAGATCTAA AAGCCTTTGC TAAAGAGTCT GCTTCTCCAG AAGCCAATGA
    CCTGGCTCAC TGGGACCTAA GCTTCTGGAG TGAACGACTC CGGGAATCTA
    AATATGATAT CAACGAGGAA GATTTGCGTC CTTACTTTGC ACTACCCAAG
    GTTATGGATG GCCTCTTCAG TCTCGCAAAT AGGCTCTTTG GTGTTAGCGT
    AGAGCCTGCA GATGGACTGG CTCCTGTTTG GAATAGTGAT GTCAAATTTT
    ACTGTGTCAA AGATTCTTCG AATAGCCCTG TTGCTTATTT CTACTTCGAT
    CCATATTCAA GACCATCTGA GAAGCGTGGA GGGGCTTGGA TGAATGTGGT
    TTTTTCTCGC AGTCGTGTGC TTGCTCGCAA TGGTTCACCT GTCAGGCTTC
    CTGTTGCCCA TATGGTGTGT AATCAGACCC CACCAGTTGG TGATAAACCC
    AGTCTTATGA CCTTCCGTGA GGTTGAAACT GTGTTCCATG AATTTGGTCA
    TGCGCTGCAG CACATGCTTA CCAAACAAGA TGAAGGATTT GTTTCTGGTA
    TTCGTGGAGT AGAATGGGAT GCTGTAGAGC TGCCCTCTCA GTTCATGGAG
    AACTGGTGCT ACCACAAGAA TACTCTTTTG AGCATTGCAA AGCATTATGA
    AACAGGCGAA CTTCTTCCAG AGGAAATTTA TGCAAAGCTT GTCGCTGCAA
    AGAATTTCCG TGCTGGCACC TTCAGTTTAC GTCAGATACG TTTTGCTAGT
    GTGGACATGG AGCTGCATAC GACTTACGAT CCAAATGGTT CATTGTCCAT
    ATATGATGTC GACCGAAGAG TTGCTGAGCG AACACAGGTT CTTGCTCCTC
    TTCCGGAGGA TAAATTCCTG TGCAGCTTTA GCCATATATT TGCAGGAGGC
    TATGCAGCTG GATACTACAG TTACAAGTGG GCTGAAGTAT TGTCAGCTGA
    TGCATTCTCA GCATTTGAAG ACGTTGGTTT GGACAATGAG AAGGCAATTG
    AGGAAACTGG CAGACGATTC AGAGAAACAG TCCTTGCGCT TGGAGGTGGA
    AAATCTCCAC TCGAGGTGTT TGTGTCTTTC CGCGGACGGG AGCCATCACC
    GGAAGCTCTG CTCAGGCACA ACGGCTTGCT ACCTGTTGCT GCATTGTGAT
    AACTCATGCT CGATTGTCCC CTTCTTTTTT CTTTTAACTT GCGAAAACGG
    CTTGTAAGAT GTTATTGATT GATGGCATAT CAGCAACACG CTAAAAGTGC
    CGTGTCCTGC TTACAACATG AAAAACAAGT TGCTGTGCAC AACCATTATA
    TAATGATCAT CGCTGCTTCT TGCCGTTC

    Gene models with high sequence identity

    1. AT5G65620.1 [+] show detail - Zincin-like metalloproteases family protein
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOPEPTIDASE A 1.2e-195
    HMMPanther PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 1.2e-195
    HMMPfam Peptidase M3A/M3B, thimet/oligopeptidase F 2.3e-138
    superfamily Metalloproteases ("zincins"), catalytic domai 5.8e-209
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    Gene3D no description 3.6e-120

    See the detailed result >

    AT5G65620.1

    Model type
    Protein coding
    Short Description
    Zincin-like metalloproteases family protein
    Computational Description
    Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G10540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR