K13235

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13235

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13235

Determination of introduced cDNA(s)

  • J023040J23 - Rice Full-length cDNAs - Original: J023040J23

    full reading [+] show sequence

    Nucleotide sequence: J023040J23 - full reading 
    GGTCTCGGCT TCCTCCTTCC TCATCCGTCT CCCACTTGTC GCTCGAGCTC 
    GCCTCCCAAA CCCTACCTCC TCCTCATATA CCTCTAGGTC TAGGTCTAGG 
    GCCCTCCTCC TCCTCCCCGC CTCCTCCCCT CTTCGCGCCT TCTGCCCCGC 
    CTCCCGCCGC CCCTCGCCCG CCACCTGCTC CGCCGCCTAC GCCTCCTCCT 
    CCATGGCCAC CGACGACAAC CCGCTCCTCG CCGACTTCGA CTTCCCGCCC 
    TTCGACCGCG TCGAGCCCAT CCACGTCCGC CCCGCCGTCC GCACGCTCCT 
    CGCCCGCCTC GAGGGCGAGC TCACCGACCT CGAGAAGGGC GTGCAGCCCA 
    CCTGGGGGAA GCTGGTCGAG CCGCTCGAGC GGATCGTCGA CAGCCTCGAG 
    GTCGTCTGGG GCACCGTCGA CCACCTCAAG GCCGTCAAGG ACTCTTCCGA 
    CCTCCGCGCC GCCGTCGAGG ACGTTCAGCC TGACAAAGTC AAATTCCAAC 
    TAAGGCTGGG CCAGAGCAAG CCTATATACC AAGCTTTCAA CGCCATAAGG 
    AATTCTTCAG ACTGGGAAAC CCTCAGTGAG GCTCGCAAGC GTATAGTAGA 
    AGCCCAAATC AAGGAAGCCG TTCTAAGTGG AGTCGCACTT GAGGATGAAC 
    AGAGGGAGAA ATTTAATCAA ATCGAGCAGG AGCTTGAGAA GTTAACACAA 
    AAGTTCAGTG AAAATGTGCT GGATGCAACT AAGAAATTTG AGAAATTAAT 
    TACTGATAAG AATGAAATTG ATGGGTTACC TGCCACAGCA CTTGGCTTAG 
    CAGCACAGAC TGCCGCGTCA AAGGGTCATG AAAATGCTTC GGCTGAAAAC 
    GGACCATGGA TCATCACATT GGATGCGCCA AGCTATATTG CTGTTATGCA 
    GCATGCACGG AACAGAGCAC TTCGTGAAGA AGTTTATCGT GCTTACCTAA 
    CCCGTGCCTC TAGTGGCGAC CTTGATAACA CCAATATCAT CAGTCAAATT 
    CTAAAGTTGA GGCTGGAGAA GGCTAAGCTA CTCGGCTACA AGAACTATGC 
    TGAGGTAAGC ATGGCTCAGA AAATGGCAAC TGTTGACCGT GTAGAAGAGC 
    TTCTTGAGAA ACTCCGTGCT GCCTCCTGGG ATCATGCTGT TAAAGATATG 
    GAAGATCTAA AAGCCTTTGC TAAAGAGTCT GCTTCTCCAG AAGCCAATGA 
    CCTGGCTCAC TGGGACCTAA GCTTCTGGAG TGAACGACTC CGGGAATCTA 
    AATATGATAT CAACGAGGAA GATTTGCGTC CTTACTTTGC ACTACCCAAG 
    GTTATGGATG GCCTCTTCAG TCTCGCAAAT AGGCTCTTTG GTGTTAGCGT 
    AGAGCCTGCA GATGGACTGG CTCCTGTTTG GAATAGTGAT GTCAAATTTT 
    ACTGTGTCAA AGATTCTTCG AATAGCCCTG TTGCTTATTT CTACTTCGAT 
    CCATATTCAA GACCATCTGA GAAGCGTGGA GGGGCTTGGA TGAATGTGGT 
    TTTTTCTCGC AGTCGTGTGC TTGCTCGCAA TGGTTCACCT GTCAGGCTTC 
    CTGTTGCCCA TATGGTGTGT AATCAGACCC CACCAGTTGG TGATAAACCC 
    AGTCTTATGA CCTTCCGTGA GGTTGAAACT GTGTTCCATG AATTTGGTCA 
    TGCGCTGCAG CACATGCTTA CCAAACAAGA TGAAGGATTT GTTTCTGGTA 
    TTCGTGGAGT AGAATGGGAT GCTGTAGAGC TGCCCTCTCA GTTCATGGAG 
    AACTGGTGCT ACCACAAGAA TACTCTTTTG AGCATTGCAA AGCATTATGA 
    AACAGGCGAA CTTCTTCCAG AGGAAATTTA TGCAAAGCTT GTCGCTGCAA 
    AGAATTTCCG TGCTGGCACC TTCAGTTTAC GTCAGATACG TTTTGCTAGT 
    GTGGACATGG AGCTGCATAC GACTTACGAT CCAAATGGTT CATTGTCCAT 
    ATATGATGTC GACCGAAGAG TTGCTGAGCG AACACAGGTT CTTGCTCCTC 
    TTCCGGAGGA TAAATTCCTG TGCAGCTTTA GCCATATATT TGCAGGAGGC 
    TATGCAGCTG GATACTACAG TTACAAGTGG GCTGAAGTAT TGTCAGCTGA 
    TGCATTCTCA GCATTTGAAG ACGTTGGTTT GGACAATGAG AAGGCAATTG 
    AGGAAACTGG CAGACGATTC AGAGAAACAG TCCTTGCGCT TGGAGGTGGA 
    AAATCTCCAC TCGAGGTGTT TGTGTCTTTC CGCGGACGGG AGCCATCACC 
    GGAAGCTCTG CTCAGGCACA ACGGCTTGCT ACCTGTTGCT GCATTGTGAT 
    AACTCATGCT CGATTGTCCC CTTCTTTTTT CTTTTAACTT GCGAAAACGG 
    CTTGTAAGAT GTTATTGATT GATGGCATAT CAGCAACACG CTAAAAGTGC 
    CGTGTCCTGC TTACAACATG AAAAACAAGT TGCTGTGCAC AACCATTATA 
    TAATGATCAT CGCTGCTTCT TGCCGTTC

    Gene models with high sequence identity

    1. AT5G65620.1 [+] show detail - Zincin-like metalloproteases family protein
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther OLIGOPEPTIDASE A 1.2e-195
    HMMPanther PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED 1.2e-195
    HMMPfam Peptidase M3A/M3B, thimet/oligopeptidase F 2.3e-138
    superfamily Metalloproteases ("zincins"), catalytic domai 5.8e-209
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    FPrintScan PRICHEXTENSN 1e-08
    Gene3D no description 3.6e-120

    See the detailed result >

    AT5G65620.1

    Model type
    Protein coding
    Short Description
    Zincin-like metalloproteases family protein
    Computational Description
    Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G10540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR