K13238

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13238

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13238

Determination of introduced cDNA(s)

  • J033014L15 - Rice Full-length cDNAs - Original: J033014L15

    full reading [+] show sequence

    Nucleotide sequence: J033014L15 - full reading 
    GAAATGCTCC ATTAGCTCCC GAAATCCAAA CCACCCCCCT CCTCCCCTCA 
    CGGGCTCACG GCCTCACCCA CCCACCAACC CATCCATCCA ACTCCGCGGC 
    GGCGGCGGCG GCGATGACGA CCCGATCCAA CGGCGAGCAC CACCACGGGC 
    CGCCCTCGTA CCAGCAGCGG CGCCCGCACT ACGGGGGCGG GTACGGCGGC 
    GGGTCGGCCT CGTTCCGCGG CTGCTGCTGC TGCATCTTCC TGCTGCTCAC 
    CTTCCTGGCC CTCCTCGCGC TGGCCGTCGC GCTCGTCGTG GTGCTGGTGG 
    TGAAGCCGCG GAAGCCGCAG TTCGACCTCA ACCAGGTGTC CGTCCAGTAC 
    CTCCTCGTCA CCCCGCCGTC CTCCGCCGCC TCCGCCGTGG GGGGGACCGT 
    GGCCGCCGCG GTCCCCGCCG CGGCCTACCT CTCCCTCAAC ATCACGCTCC 
    TCTTCACCGC CGTGAACCCC AACAAGGTCG GCATCCGCTA CGGCGCCACG 
    GCGTTCGACG TCATGTACCA CGGCGTGCCG CTCGGGGTGG CGGCCGTGCC 
    CGGGTTCGAG CAGCCGGCGC ACAGCACCCG CCTGCTCCAG ACCCGCGTCA 
    TCGTCGACCG CTTCAACGTG CTCCAGGCCG ACGCCCAGGA CCTCGTCCGC 
    GACGCCGCGA TCAGCGACCG CGTCGACCTC CGCATCACCG GCGACGTCGG 
    CGCCAAGATC CTCGTGCTCG GCTTCTCCTC CCCAAAAGTC CAGGTGTCGG 
    TGGATTGCGC GATCGCCATC AGTCCGAGGA GGCAGTCACT GACATACAAG 
    CAATGTGGCG TGGATGGCCT AAGCGTCTAG CAGCAGCAAC CAACCACCAC 
    ACCATCGCAG CAACAGCAGC AGCAGAAGAA GAAGAAGGAT GCAGAAGGCT 
    TAATCTAATG GAGATAGATA AGTGGATGTG ACCCGTGTTT GTCGATTCTA 
    ATCTCTCTTT CTCTATCTAA TCCTGGGTTC CGATTCCTGT ACGTGGGGGG 
    TAAATTTTGA GCTCTCTCAC CTCACCCTAG AGGAGGAGGT CGCCGCTGAT 
    TTTTGTGAAT TACTGTCCGG TAATTATCAC TATCGCCCAA TTCGCC

    Gene models with high sequence identity

    1. AT2G01080.1 [+] show detail - Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
      E-value: 4e-55; Score: 212.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan IQ calmodulin-binding region 6.504
    HMMPfam Late embryogenesis abundant protein, group 2 3.7e-14

    See the detailed result >

    AT2G01080.1

    Model type
    Protein coding
    Short Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
    Computational Description
    Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G27080.2); Has 675 Blast hits to 674 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 673; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR