K13315

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13315

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13315

Determination of introduced cDNA(s)

  • J033073D03 - Rice Full-length cDNAs - Original: J033073D03

    full reading [+] show sequence

    Nucleotide sequence: J033073D03 - full reading
    GACCCGCCTC CGCCGATCCC CATTCCAACC CGCGACTGCG AGCGAGGCGA 
    GTAGGGCGGC TTCGTCGTTC GTCCTGCTGC TTCCGCCGCA TCCATCCTGA
    TATGACTTGT TGAGTGGAAA GAATCAATAT AGTACAATCT ATTTTCTTCT
    CAATGTGTAG AAGAAACAGT CTGTAACCAT ACATACTTAT TAATACGACT
    AGTGAAATCT AGACATGGAC GATGAGAATG GCCTTGAGCT TAGCTTGGGT
    CTCTCTTTGG GTGGGACATC AGGAAAGTCT AAGGCTAGAG ATGCTCCTCT
    AGAACCTAAA GCAGAGCCTC AAGTGGAAGA GAGCAGTAGC AAAGGTGTTT
    CACAAACTCC TGAGGCTCCT TTTGTGCATT ACTATCAAAC AAATGCAGAG
    AACCAAGAAC ACAGTAGCAA GCAGAGACAC AGCCCTGCTG CACCACCGTT
    TGGGAACTTT TGGGGACAGC CAGGGAGTTC TTCTGTTCCT GTGGCAGATG
    GATCCAATGA ACAGAAGCCA GTCTCTAGTA AACGGAAATT ACTTTCTGAG
    GAGATAAGTT TTCAGAAGAA ACCTAATACA GCTGCTGAGC AACCTGATGC
    ATTTAGTAAG AGCTCTGACG GTGGTGTAAA AAACGCTCCT ATTTCAATTA
    GCACGGATGA TGGTTCAACA GGTGAAAACG AGGATGTTGC AGAATCAGAA
    GCAGAAGGCT CAAACTCTTG GTTGGTTGCA CAGCGTGAAG ACAGTGCTAA
    GGGATCTGTT GTCAATAGAG GATCTGACAG AAAACGATCC AGTGATGATG
    CTGCAGTTGG TTTTCAAGGA AAGAGGCAGC CAAGTTTCTC AGGAAGTGAA
    TCCAGCTCTG GAAAATTGCC ACAAGGAAAT CCTTTGTCAT TGCAAGCATC
    AAATGTTGTT GCTGTGCCAT ATCAAGTCCC GTCTCAGGTT TCAGCTCCTC
    CCAGTATTAC CAATGCATCA AATTTCACTC CAGTATGTAC AGTGCAGTTG
    AGGCCACCTA CAAACAATGG ACTAGCTGTT ACAATGGGCA GTACCTCTCA
    GGTAGCTTTT GGTTATCCAG CTGTCCAGCT ACCAACACTT GAAACAAGCT
    CTTCATGGGC TTTTGGTGCT CCACCTCAGG CTATGTCCTC TTTTACTGCA
    AAAGACAAAG TTGAACGAGC AGGAATCAGT CAAGCTGACG ATGGCAAGAA
    AACTCAAGAG GCTGGTGCTT CCTCTTCTGC TCTTGTGGAG GATGACAAGA
    AGTCTGATAG GGCATTACCT CTCATGGGTT CTGCTATAAG GCCAGGCATT
    GCACCAAATG TCAAATTCGG AGGATCTGGA TCGTATCCTG ACCTTCCCTG
    GGTTTCTACC ACTGGTACTG GGCCAAATGG CAGAACCATA TCAGGTGTAA
    CATATAAGTT TGGCAGAAAC GAGGTGAAGA TAGTCTGTGC CTGCCATGGC
    ACCCACATGA CGCCGGAGGA ATTTATGCGG CACGCAAGTG CAGATGCTCC
    GGGCCAAGAA AATAGTGCAA CTTTGCCGGC ATTTCCTGTC GGGAACCAAG
    CAGCCTCAGC CCAAAACTAA TTCACCGATC TGTATGACGG TTTCAATGAG
    TGCTGGACTA ATACCTGTTG CGCCCTTTGT GTTTATATCC TCCATTCCTT
    ATACTATTAT TATTATGTAT TGGTGCTCAT ATGATATTTA TCTTGTAAGT
    TTAGACACGT CATGTTTTAT GCTTGATGTT GAGGATAAAT TTGTTGTATG
    TCTTTAACTT ATTATTATGC ATCTTTTTAG GAGGATCAAA CAAGTCGGAG
    CTTTAAATAA CCTGAATTCC GCTGTAGCCA TATGGAATCA TGTGGATTTT
    TTGCCAATTG ATGTTGTGGT G

    Gene models with high sequence identity

    1. AT4G28910.3 [+] show detail - novel interactor of JAZ
      E-value: 3e-43; Score: 173.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G28910.3

    Model type
    Protein coding
    Short Description
    novel interactor of JAZ
    Computational Description
    novel interactor of JAZ (NINJA); FUNCTIONS IN: protein binding, transcription repressor activity; INVOLVED IN: response to jasmonic acid stimulus, jasmonic acid mediated signaling pathway; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein 3 (TAIR:AT3G29575.4); Has 317 Blast hits to 301 proteins in 73 species: Archae - 2; Bacteria - 15; Metazoa - 43; Fungi - 39; Plants - 175; Viruses - 3; Other Eukaryotes - 40 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR