K13325

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13325

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13325

Determination of introduced cDNA(s)

  • J033055L05 - Rice Full-length cDNAs - Original: J033055L05

    full reading [+] show sequence

    Nucleotide sequence: J033055L05 - full reading 
    GATCTCGTTC TTCCCACACA CGCGCGCACA CACACATCTT GTGTGAGACT 
    TGTATGATCG ATTGCTAGGG CTATTTCGAT TCGTCACGTT ATACGCATAC 
    GCGTTATTAG CTTAGTTCAT TAGCTCAAGG TTAATTAATT AACGACATGG 
    CTGCTCGGTC GTCGTCGTCG CCGGCGAAGA CGACGACGAC GCTGGCTTTG 
    CTGTTGGTGG TCGCGGCGGC GGCCGCTGCT GTGGCGGCGG AGGCGGCGGC 
    CGTGGCGGCG GACGCGGCGC GGGGCGTCCG GCAAGTGAAC CGGCGGGGCC 
    CGTACCTGGG CGTGGTGGTG CCCAACGGGT TCGAGATGGA GCCGCTCCTC 
    CGCTCGCCGG CCTTCTCGCC GGCCAAGAAG CTGCCATACC TCGACGTCGC 
    AGGAAGGAGA TTTCGCTTCG GATCGATAGG AGAGAAGAAG GTGATCATCG 
    TCATGACAGG CCTCGGCATG CTCAACTCCG GCGTGACCAC CCAGCTCCTC 
    CTCACCCTCT TCGACGTCGA GGGCATCGTC CACTTCGGCA TCGCCGGCAA 
    CGCCGACCCC GACCTCCACA TCGGCGACGT CACCGTCCCC CGCTACTGGG 
    CGCACACCGG ACTCTGGAAC TGGCAGCGGT ACGGCGATGG GCCGGAGAAG 
    GAGCTCGCGC TGGAGTCCAA TGGCGACTAC ACGAGGAAGT ACGGGGCGCT 
    CAACTTCTCC GACTACGGCG TCGCCGGCGG CGGCGGCGGC AACCTGCTGA 
    ACGGCGTGTG GTACCAGCCG GAGGAGGTGT TCCCGGCGGA CGGCACGCCG 
    GAGTCTCGCC GCCACGAGTT CTGGGTCCCC GTCGACGGCC GGTACTACCA 
    GCTCGCCCAG AAGCTGGAGG CGATGCCGCT GGAGCGCTGC GTCAACCGCA 
    CCGGGACGGC GACGTCGCCG GCGACGTGCC TGGCGCGGGC GCCGGCGGTG 
    GCGCGCGTGG AGCGCGGGTG CAGCGCCAGC GTGTTCGTGG ACAACGCGGC 
    GTACAGGCAG TTCCTGCGGT CCAGGCTGGG CGTGACGCCG ATCGACATGG 
    AGTCGGCCGC CGTCGCGCTG GTGGCGGCGC AGCAGGGGGC GCCGTTCATC 
    GCCATACGGT CGCTCTCCGA CCTCGCCGGC GGCGGCTCCG CGGAGTCCAA 
    CGAGGCCGGC GTGTTCGCGG CGCTGGCGGC GCAGAACGCG GTGGCCGTCG 
    CCGTCAAGTT CATATCGCTC TTAAGCTAAG AAGCTGTCTT AACCATCGTC 
    GATGAAGGTT GAGAATGATA ACCCTATAAT GGTAATTAAT TAGAAGTGTT 
    ACCTCGTGTG TTGTTCACGA TAGACGTTAT TGTTCTGATT AAACTTTATA 
    TTATTGACAC ATTTTTTAAA AAAGAAACAG TTAAATC

    Gene models with high sequence identity

    1. AT4G28940.1 [+] show detail - Phosphorylase superfamily protein
      E-value: 7e-90; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nucleoside phosphorylase 5.1e-55
    superfamily Purine and uridine phosphorylases 6.7e-40
    Gene3D no description 1.2e-31
    HMMPanther MTA/SAH NUCLEOSIDASE 5e-54
    HMMPanther Nucleoside phosphorylase, family 1 5e-54

    See the detailed result >

    AT4G28940.1

    Model type
    Protein coding
    Short Description
    Phosphorylase superfamily protein
    Computational Description
    Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24340.1); Has 4063 Blast hits to 3116 proteins in 1287 species: Archae - 0; Bacteria - 3887; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR