K13330

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13330

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13330

Determination of introduced cDNA(s)

  • J013001B07 - Rice Full-length cDNAs - Original: J013001B07

    full reading [+] show sequence

    Nucleotide sequence: J013001B07 - full reading 
    GAAGTAAGAA TTGTGGTTGC CACTCGGCAC TCGCCACCAT GCTCCTCGTC 
    GGCGTCCTCC TGCTGCTCTT CTTCAACCTA CATCTCCCCA CGGCCGCCAT 
    TGACACCCTC ACGCTAGGCC AGTCTCTGCT GTGGAACCAG ACGCTGGTCT 
    CCAATGGCGG CAACTTCGAG CTCGGCCTCT TCTCGCCGGG AAAGTCCAAC 
    AAGCACTACC TTGGCATCTG GTACAAGAAG ATCTCCAAGA AGACGGTTGT 
    TTGGGTTGCC AACCGTGAGC GCCCGATTCT TGAGCCGTCG AGCTGCCACC 
    TCGAGCTGAG CGTCCACGGC GATCTGCGGC TGTTCTCGAC GGCGCCGTCG 
    AACACCTTGC TGTGGTCGTC GAACGCGTCC GCGTCTTCCT CGCCGTCGCC 
    CCCGCGCACC ACCGTGGCCA CGCTCCAGGA CGACGGCAAC CTCGTGGTGA 
    ACAGCAACGC GACGCGGTCG CGGTCGCGAT CGCCGTCGTC GACTACGACG 
    ACGCACGTGG CGTGGCAGAG CTTTGATCAC CCGACCGACA CATGGCTCCC 
    CGGAGCCAGG CTCGGCTACG ACAGGGGCCG CGGCGTCCAC AGCTTCCTCA 
    CGTCGTGGAC GGACTCCGAG AACCCGGCGC CCGGCGCGTT CTCCATGGTG 
    ATCGACGCGC GCGGGCTGGC CAAGTTCGAC CTCCTCGCCG GCGGCGAGCA 
    CCGGTACTGG ACGACCGGCC TCTGGGACGG CGAGATCTTC GCGAACGTGC 
    CGGAGATGCG GTCCGGCTAC TTCACCGGCG TCCCCTACGC GCCGAACGCC 
    AGCGTCAACT TCTTCAGCTA CCGCGACCGG CTGCCGGGCG CCGTCGGCAA 
    CTTCATGCTG GACGTGAACG GGCAGATGCG GCGGCGGCAG TGGAGCGAGA 
    CGGCGGGGAA GTGGATCCTC TTCTGCTCGT TGCCCCACGA CGCGTGCGAC 
    GTGTACGGCT CGTGCGGGCC CTTTGGAGTC TGCAGCAACG CCACCAACCC 
    GGAGTGCCGG TGCCCCGCCG GCTTCGAGCC GCGGTCGTCG GAGGAGTGGA 
    GGCTGGAGAA CGCCGCCGGA GGCTGCGTGA GGCGGCACCC TCTCGAGTGT 
    CACGGAGACG GGTTCCTGGC GCTGCCGTAC ACCGTGCGGC TCCCGAATGG 
    CTCCGTGGAG GCGCCGGCCG GAGCTGGGAA CGACAAGGCG TGCGCGCACA 
    CCTGCCTGGT CGACTGCTCC TGCACGGCCT ACGTTCACGA CGGAGCGAAG 
    TGCCTCGTGT GGAACGGCGA GCTCGTCAAC ATGAAAGCCT ACGCGGCTAA 
    TGAGAATGGC CAAGGCGATC CTGGCCTCGC CGGAGCGGTG CTTCACCTCC 
    GTGTCGCCCA CTCGGAGGTT CCGGCGTCGT CGACGGAGCA CTCGTGGAAG 
    AAATCGATGG TAATCCTTGG AAGCGTCGTT GCGGCGGTGG TGCTGCTCTT 
    GGCGAGCCTC GTCACCGTGG TGGCGGTGGC GGCGGTGTTG CGGATGCGGC 
    GTAGGAGGGG CAAGGTGACG GCGGTGCAGG GGTCGCTGCT GCTGCTCGAC 
    TACCATGCCG TGAAGACCGC GACGAGGGAC TTCTCGGAGA AGCTCGGGAG 
    CGGGAGCTTC GGCACGGTGT TCAAAGGCGC GCTGCCGGAC GGGACGCCCG 
    TGGCCGTCAA GAAGCTCGAC GGTCTCCGGC AAGGCGAGAA GCAATTCAGA 
    ACGGAGGTGG TGACGCTCGG CATGATCCAG CACGTCAACC TCGTCGGACT 
    CCGTGGCTTC TGCTGCGAGG GAAACAAGAG GGCGCTCGTG TACGACTACA 
    TGGCCAATGG CTCGCTGGAC TCGCACCTGT TCGTCATGAG CGGCTCCAGC 
    TCCGGCCCCG ACTCCAAGCA GGTGACCCTG ACTTGGAGCC AACGGTACAA 
    CGTCGCGGTT GGTGTGGCAC GGGGCTTGGC TTACCTGCAC GAGAAGTGCA 
    GGGAGTGCAT CATACACTGC GACGTCAAGC CGGAGAACAT CCTCCTCGAT 
    CAGGAGATGG CGGCGAGGCT CGCGGACTTC GGCATGGCCA AGCTCGTCGG 
    CCGCGACTTC AGCAGCGTCC TGACCACCAT GCGGGGCACG GTGGGATACC 
    TCGCGCCGGA GTGGCTAGCC GGCACGCCGG TCACCGCAAA AGCCGACGTG 
    TACAGCTTCG GGCTCCTGCT CTTCGAGCTC GTCTCGGGCC GGCGGAACAG 
    CACCGCGCCG TCGTCGTCGT CGGAGGGCGG CCCTGGGATT TACTTCCCGG 
    TTCATGCCGT GGTCAAGCTA AACGAAGGCG ACGTGGCCGG GCTGGTCGAC 
    GAGAGGGTGG CCAAGGATGC CGACCCGAAG GAGGTTGAGA GACTCTGCAA 
    GGTCGCGGGC TGGTGCATTC AAGACGAGGA AGGCGACCGG CCGACCATGG 
    GGCTCGTCGT GCAGCAGCTC GAAGGCATCG CCAACGTAAT GTTGCCGCCG 
    ATCCCTTCTC GGCTTCATAT CCTGGCGATT GAGAACGAAT GGGTCAGAGG 
    TGTTCCAGAG GATGAGCGCT GCTCAAAGAG CGGTAGTAAA CCAGAAACAG 
    AAGCAATAGA AGAAATGTAG AACTGAAAAG AATCTGGGAG CACCCTACAG 
    CTGAAGTGAA GATGCAGCGT CAGATATGAA AATGTAGTTG TAATGTCAGC 
    ATAGTTGATA TTTCCCGTGT GGATGTATAG CCAGTACTGT ACTGCAACTG 
    TTCTGTAAAT TCCTTAAATT CCGGAAACAG GATCAGACAA GTACCTTCTC 
    TCGTTT

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 0; Score: 644.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 7.8e-21
    Gene3D no description 9.4e-47
    ProfileScan Protein kinase, catalytic domain 36.315
    ProfileScan EGF-like, type 3 10.871
    ProfileScan Curculin-like (mannose-binding) lectin 18.336
    ProfileScan Apple-like 7.974
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Curculin-like (mannose-binding) lectin 1.9e-32
    HMMSmart Serine/threonine-protein kinase domain 6.1e-31
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.3e-23
    superfamily Protein kinase-like domain 1.9e-73
    superfamily Curculin-like (mannose-binding) lectin 1.2e-24
    HMMPanther S-RECEPTOR KINASE 1.5e-176
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.5e-176
    HMMPfam Serine/threonine-protein kinase-like domain 9e-45
    HMMPfam Curculin-like (mannose-binding) lectin 9.5e-31
    HMMPfam S-locus glycoprotein 3.4e-25
    HMMPfam PAN-2 domain 0.000000000000031

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR