K13343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13343

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13343

Determination of introduced cDNA(s)

  • J023083K01 - Rice Full-length cDNAs - Original: J023083K01

    full reading [+] show sequence

    Nucleotide sequence: J023083K01 - full reading 
    GACCGCATCA TCGGCTTCCC TCCGGCTCGA GCCAATCTCT CGCTGTGTCT 
    CTCTCGCGCT CTCCACTAGC ACCGGCTCGG CTCGGCTCGC GCGGCGGCGG 
    CGGCGGGGCG GCGTGGCGCC GAGGGAGGGG AACGCCGGTG TGGGGAGGGC 
    GGCGGCGAGG GGACTCGCCG GCGACGAGCT GGTTTGGGTA TGAGAGGGGT 
    TACCCATGCG GCGCCGACCA CGAGCGTCCC CCGCCGCGGC TCCATGGACG 
    GCCTCCTCAT CTTCGTCTTC TACCTCTCGC TTCCTATACG TGGTGGCCGC 
    GACCACTCGT TAATCTCCTC CTCTAATTGT TAGCCGATCT CGCCTCTCCC 
    CCACACTCTC TGATCCCGCT CTCTCTCTCT GCTTCGATTC GATTCGATTC 
    GATCTTCTCC ACCTCGTCGC CGTCGAACGC AACTCGGATC GGGAGGATAA 
    TGGACCAGCC TTCTAATGGC TTCGCCGCCG GAGGTCTTTT TCTTCGTCAC 
    ATTGATGGGC AAAATGCCTC TCCCCCTTCT GTCATTGTGA TTGGTGGAGG 
    GATTTCAGGC ATTGCAGCTG CTCGTGCGCT GTCTAATGCT TCGTTTAAGG 
    TCACACTATT AGAGTCACGG GACCGACTTG GTGGCCGTGT GCATACTGAC 
    TATTCTTTTG GCTGCCCAAT TGACATGGGA GCATCTTGGT TGCATGGTGT 
    ATGCAATGAG AATTCATTGG CACCACTGAT TAGGTTGCTT GGCCTTAGAT 
    TATATCGCAC CAGTGGTGAT AACTCTGTGC TATATGACCA TGATCTGGAG 
    AGCTATGCTC TCTTTGATAA GGATGGTCGT CAAGTTCCCC AGGAGATAGT 
    GACAAAAGTC GGGGAAACAT TTGAGAAAAT TCTTAAGGAG ACGGTGAAAG 
    TAAGAGCTGA ACATGAAGAT GACATGCCTC TTATTCAAGC CATCTCAATT 
    GTGCTTGACA GGAATCCACA CCTAAAGCTT GATGGTTTGC AATATGAAGT 
    ACTGCAGTGG TGCATATGTA GGCTGGAGGC ATGGTTTGCC ACAGATGTGG 
    ATAATATATC TCTGAAAAAT TGGGATCAGG AACATGTTCT TACTGGTGGC 
    CATGGGCTTA TGGTGCATGG TTATGATCCT GTTATCAAAG CTCTCGCGCA 
    AGATCTTGAT ATCCACCTGA ACCACAGGGT TACCAAAATC ATCCAGAGGT 
    ACAACAAAAC TATAGTATGT GTTGAAGATG GGACAAGCTT TGTTGCAGAT 
    GCTGCTATAA TAACTGTCCC TCTTGGTGTA CTTAAAGCAA ATATCATCAA 
    GTTTGAACCT GAGCTCCCAG ATTGGAAGCT TTCATCAATA TCTGATCTTG 
    GTATTGGCAT TGAGAACAAA ATAGCCCTCC GCTTCAATAG TGTATTTTGG 
    CCAAATGTAG AAGTGCTAGG CAGGGTTGCC CCAACATCAA ATGCCTGCGG 
    TTACTTTCTT AACCTTCACA AAGCCACAGG GCATCCGGTT CTTGTATGCA 
    TGGTAGCAGG AAGATTCGCA TATGAATTCG AGAAGCTATC CGATGAAGAA 
    TCCGTAAACT TTGTCATGTC TCAGCTCAAG AAAATGCTAC CAGGAGCTAC 
    TGAACCGGTC CAGTATTTGG TTTCAAGGTG GGGAACCGAC CCGAATTCGC 
    TTGGTTCTTA TTCCTGCGAC CTTGTTGGGA AGCCAGCTGA CTTGTATGAA 
    AGATTCTGTG CTCCGGTGGG CAACCTGTTT TTCGCTGGGG AGGCCGCCTG 
    CATCGATCAC TCTGGGTCCG TGCATGGAGC TTATTCTTCA GGCATTGTTG 
    CTGCAGAGGA TTGCCGAAGG CATCTGTCGA CGCAGCTAGG CATCTCCGAC 
    CTTTTCCAGG TTGGGAAGAT TATCATGAGG GAGGAGATGA CTGAAGTCAT 
    GGTCCCCTTC CAGATATCCA GGCTGTGAAA GAAGAACAAA GCCTGCCTAT 
    TTAGCACCGT GTTTATCCTG CAGCTGCTAT GGTTAATATT GTAGCTGCTG 
    CTCTGTAGTT TCCTAATTAT CTCAGATCCT GTACCGTTTC ACAGTTTGAT 
    CGTTTATGTG TATTCAAATA AAAACAGAAT AATTATATAT CAACAGACCT 
    TGTTCTCTGA ATC

    Gene models with high sequence identity

    1. AT1G65840.1 [+] show detail - polyamine oxidase 4
      E-value: 1e-166; Score: 583.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amine oxidase 5.7e-92
    superfamily FAD/NAD(P)-binding domain 1.1e-46
    superfamily FAD-linked reductases, C-terminal domain 1.4e-27
    Gene3D no description 1.1e-56
    HMMPanther AMINE OXIDASE 1.2e-288
    HMMPanther AMINE OXIDASE 1.2e-288
    FPrintScan Flavin-containing amine oxidase 8.5e-11
    FPrintScan Flavin-containing amine oxidase 8.5e-11
    FPrintScan Flavin-containing amine oxidase 8.5e-11
    FPrintScan Flavin-containing amine oxidase 8.5e-11

    See the detailed result >

    AT1G65840.1

    Model type
    Protein coding
    Short Description
    polyamine oxidase 4
    Curator Summary
    encodes a peroxisomal polyamine oxidase, involved in the back-conversion polyamine degradation pathway. Among the five polyamine oxidases in the Arabidopsis genome, PAO4 is the major isoform in root peroxisomes.
    Computational Description
    polyamine oxidase 4 (PAO4); CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Flavin-containing amine oxidase (InterPro:IPR001613); BEST Arabidopsis thaliana protein match is: polyamine oxidase 3 (TAIR:AT3G59050.1); Has 7028 Blast hits to 6613 proteins in 1153 species: Archae - 127; Bacteria - 2858; Metazoa - 1453; Fungi - 590; Plants - 766; Viruses - 0; Other Eukaryotes - 1234 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR