K13349

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13349

Determination of introduced cDNA(s)

  • J033034D12 - Rice Full-length cDNAs - Original: J033034D12

    full reading [+] show sequence

    Nucleotide sequence: J033034D12 - full reading 
    GGCGCGAGTT CGCGAAAGAA AGAAACTGAA ATCCGAATTC GATTCCAATC 
    CTCTCGACCA GCGAGAGGCC TCGCCTTCCT CCTCTCCCCC ACGTTGGCGT 
    AGCTCGCGCG CGCGCGCGCG CCCGCGCCCG AATCCACAAA CAGCGTGGTC 
    GCGGGCGGGG GTTCTCGATG AGGCGGATGC TGGAGGTGGC GGCGGACGCC 
    GGCTCGTCTG CGGCGGCGGC GGCGGCAAAC GGCGCGGTGG ACTGGTGGCG 
    CGACGTGAAC GAGTCGCCGG TGTGGCAGGA CCGCATCTTC CACGTCCTCG 
    CGGCGCTCTA CGGCTTCGTC TCCGCCATCG CGCTGGTCCA ATTGATCAGA 
    ATCGAATGTA GGGTGCCCGA ATACGGGTGG ACAACACAAA AGGTGTTCCA 
    TTTCCTCAAC TTCCTCGTGA ACGGCGTGCG ATCCATAGTG TTTGTGCTGC 
    GACGAAATGT GCAGCTCATA CATCCAGAGA TACTTCAACA TGTGCTTCTA 
    GATATGCCCG GGCTCGCATT CTTCACGACG TATGCACTTT TGGTGCTCTT 
    CTGGGCCGAG ATTTATTATC AGGCGCGTGC AATGTCCACT GATGGGCTTA 
    GGCCAACTTT CTATTGGATC AATGCTGTGA TCTATGCAAT TCAGATAATA 
    TTATGGATGG TTCTATGGTG GAAACCAGTT CGAGTTATGA TCATCTTGTC 
    GAAGATGTTC TTTGCAGGTG TATCACTGTT TGCGGCTTTT GGGTTTCTTC 
    TCTACGGTGG GAGGTTATTC CTGATGTTGC AACGTTTCCC AGTTGAATCG 
    AAAGGACGGC GCAAGAAATT GCAGGAGGTT GGCTATGTGA CTACAATCTG 
    CTTTACTTGT TTCTTGATCA GATGTGTCAT GATGTGTCTC AACACATTTG 
    ATAAAGCAGC TGACCTTGAT GTTCTGAACC ATCCGATTCT GAATTTCTTT 
    TATTACTTGC TGGTTGAGAT CGTACCTTCA GCTTTGGTGC TATTCATCCT 
    AAGGAAACTG CCACCGAAAC GGGGGATCAC ACAATATCAT CCAATTCATT 
    AGAGCAGCCC TGGCAGGGAC AGAAGAGGTT TTCTTATGAG TAGTCTATAC 
    AGCGTGGTAA ATACAGAAAA GGCAATGTGA AAGATACCAC ACTTGCTTTC 
    GAGCTTGCCC CAGCTTTTGT AAGAGGAAGC CTTTAGAATC TCAGGGTACC 
    ATCGTGTGTA AAAATGCAAT CTGGTGTTGT TACAGATTTA GAAAGTGTTA 
    ACTTATATAT ATATATATAC CTTTGTTCTT CTTC

    Gene models with high sequence identity

    1. AT2G02180.1 [+] show detail - tobamovirus multiplication protein 3
      E-value: 3e-124; Score: 442.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G02180.1

    Model type
    Protein coding
    Short Description
    tobamovirus multiplication protein 3
    Curator Summary
    Necessary for the efficient multiplication of tobamoviruses.
    Computational Description
    tobamovirus multiplication protein 3 (TOM3); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1084) (TAIR:AT1G14530.2); Has 262 Blast hits to 261 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR