K13351

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13351

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13351

Determination of introduced cDNA(s)

  • J023009K09 - Rice Full-length cDNAs - Original: J023009K09

    full reading [+] show sequence

    Nucleotide sequence: J023009K09 - full reading 
    GATTCCCCCA ATTCATTCCT TCGCCGAACC ACCAGAGTGG TGGAGAGTAG 
    CTAGCAGAGT AGCAGAGCGG TGGGAGCAGC AGCAGCCGTA GCCGCATCCG 
    GAGAGATTCG GGCAGGAGAA GCCGCCGCAG CGATGGGCGC GCCGGTGCGC 
    GGCGCCCTCG TCTTCTTGCT TCTTCTCGCC GGCGCGGCCG CGGAGACGGC 
    GCCGGAGGAA CCCACATTGC CCTCCGCCGC CGCCGATGGG GCGGCTAGTA 
    GCGGGACAAC ATCTGGCGCT GGTGCTGGAA CGGGAATCAA CTCGAACTCG 
    GTGCTGGTGG CGCTGCTGGA CTCGCATTAC ACGGAGCTGG CGGAGCTGGT 
    GGAGAAGGCC CTGCTGCTCC AGACGCTGGA GGACGCCGTC GGCAAGCACA 
    ACGTCACCAT CTTCGCGCCG CGGAACGAGG CGCTGGAGCG TGACCTCGAC 
    CCGGAGTTCA AGCGCTTCCT GCTCGAGCCG AGGAACCTCA AGTCGCTCCA 
    GTCGCTGCTC CTCTTCCACG TCCTCCCCGC CCGCCTCCCC TCCGGGTCCT 
    GGTCCGCCGT CTCCCACCCC ACGCTCTCCG GCGAGGAGGT TGAGCTCGCC 
    GCCGCCGCCA ACGACGGCGC GATGCGCGTC GCCCACGCCG CCGTCACCCG 
    CCCGGACGCC GTGCTCAGGC CGGACGGTGT CATCCACGGG ATCGAGCGCC 
    TCCTCGTGCC GCGCTCTGTC CAGGAGGACT TCAACCGCCG CCGCAGCCTC 
    GCCGACATCT CCGCCGTGCT GCCAACTGGC GCGCCCGAGG TTGACCCGAG 
    GACGCACCGC CTCAAGAAGC CGGCGCCGCC CGTGCCACCC GGCGCGCCCC 
    CGGTGCTTCC GATCTGGGAC GCCATGGCCC CCGGCCCATC CATCGCGCCG 
    GCGCCTGCCC CTGGACCGGG CTCCGGGAAG CACCACTTCG ACGGCCACAG 
    CCAGGTGAAG GACTTCATCC AGACCCTCCT CCTGTACGGC GGCTACAACG 
    AGCTCGCCGA CATCCTCGTC AACCTCACCT CGCTCGCCAC CGAGATGGGC 
    CGGCTCGTCT CCGAGGGGTA CGTGCTCACC GTGCTCGCGC CCAACGACGA 
    GGCCATGGCG CGCCTCACCA CCGACCAGCT CAGCGAGCCC GGCTCGCCGG 
    AGAACATCCT GTACTACCAC ATGATCCCGG AGTACCAGAC CGAGGAGAGC 
    ATGTACAACG CGGTGCGGCG GTTCGGCAAG GTGCGCTACG ACACGCTGCG 
    GCTGCCGCAC AAGGTGGTGG CGCGCGAGGC CGACGGCTCA GTCAAGTTCG 
    GCCATGGCGA GGGCTCGGCG TATCTCTTCG ACCCGGACAT CTACACGGAT 
    GGCAGGATCG CAGTGCAGGG CATTGACGCC GTGCTGTTCC CGCCGGATGA 
    CACCAAGACG GCGCCGGACA CGGCGCCGGT CAGGAGGGCG CCCGCCGTCA 
    CCGGCACTCG CAAGAAGAAC AAACTCCGGA GAGGCAAGTT GTTAGAAGCA 
    ACGTGCCAAA TGGCTGGCAT CCTTGGTCAG CGATTGCGAT TCGCAAGCTG 
    CCAGTAGACG GCGAAAGATT GATCTCATGA TACCGAAACA CGAACTAGAA 
    TGAGGTGATG GACTGTGCTG GAGCCGTCCA CATTACCATT TGTTTTTTTT 
    TATTTTTATT TTTGTTTATT ATTACGAATA ATAAATCAGG TGGGGAATGT 
    AATCTGGTGG CTGTTGGTGT CTGAAAAAAA AAAAGGCAGG AAAATGTTCA 
    TACTTGAAGA CCGAGATCTT CTGTGTATAG GAGCGTTTTT TTTTATATTT 
    TTTTCCGTCA TTTTTTCTTC TTTTTCTGTT TTGACAGAAT GCCGAGTAAA 
    CAATTAAACA TCACAGCATC CTTGGTGTTA AAGCTAGTAG TAATCAATTC 
    TGC

    Gene models with high sequence identity

    1. AT2G35860.1 [+] show detail - FASCICLIN-like arabinogalactan protein 16 precursor
      E-value: 4e-144; Score: 508.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart FAS1 domain 4.6e-14
    HMMSmart FAS1 domain 4.9e-16
    ProfileScan FAS1 domain 18.577
    ProfileScan FAS1 domain 10.589
    superfamily FAS1 domain 3.3e-22
    superfamily FAS1 domain 7.9e-21
    HMMPfam FAS1 domain 1.7e-22
    HMMPfam FAS1 domain 1.7e-07

    See the detailed result >

    AT2G35860.1

    Model type
    Protein coding
    Short Description
    FASCICLIN-like arabinogalactan protein 16 precursor
    Computational Description
    FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR