K13351

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13351

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13351

Determination of introduced cDNA(s)

  • J023009K09 - Rice Full-length cDNAs - Original: J023009K09

    full reading [+] show sequence

    Nucleotide sequence: J023009K09 - full reading
    GATTCCCCCA ATTCATTCCT TCGCCGAACC ACCAGAGTGG TGGAGAGTAG 
    CTAGCAGAGT AGCAGAGCGG TGGGAGCAGC AGCAGCCGTA GCCGCATCCG
    GAGAGATTCG GGCAGGAGAA GCCGCCGCAG CGATGGGCGC GCCGGTGCGC
    GGCGCCCTCG TCTTCTTGCT TCTTCTCGCC GGCGCGGCCG CGGAGACGGC
    GCCGGAGGAA CCCACATTGC CCTCCGCCGC CGCCGATGGG GCGGCTAGTA
    GCGGGACAAC ATCTGGCGCT GGTGCTGGAA CGGGAATCAA CTCGAACTCG
    GTGCTGGTGG CGCTGCTGGA CTCGCATTAC ACGGAGCTGG CGGAGCTGGT
    GGAGAAGGCC CTGCTGCTCC AGACGCTGGA GGACGCCGTC GGCAAGCACA
    ACGTCACCAT CTTCGCGCCG CGGAACGAGG CGCTGGAGCG TGACCTCGAC
    CCGGAGTTCA AGCGCTTCCT GCTCGAGCCG AGGAACCTCA AGTCGCTCCA
    GTCGCTGCTC CTCTTCCACG TCCTCCCCGC CCGCCTCCCC TCCGGGTCCT
    GGTCCGCCGT CTCCCACCCC ACGCTCTCCG GCGAGGAGGT TGAGCTCGCC
    GCCGCCGCCA ACGACGGCGC GATGCGCGTC GCCCACGCCG CCGTCACCCG
    CCCGGACGCC GTGCTCAGGC CGGACGGTGT CATCCACGGG ATCGAGCGCC
    TCCTCGTGCC GCGCTCTGTC CAGGAGGACT TCAACCGCCG CCGCAGCCTC
    GCCGACATCT CCGCCGTGCT GCCAACTGGC GCGCCCGAGG TTGACCCGAG
    GACGCACCGC CTCAAGAAGC CGGCGCCGCC CGTGCCACCC GGCGCGCCCC
    CGGTGCTTCC GATCTGGGAC GCCATGGCCC CCGGCCCATC CATCGCGCCG
    GCGCCTGCCC CTGGACCGGG CTCCGGGAAG CACCACTTCG ACGGCCACAG
    CCAGGTGAAG GACTTCATCC AGACCCTCCT CCTGTACGGC GGCTACAACG
    AGCTCGCCGA CATCCTCGTC AACCTCACCT CGCTCGCCAC CGAGATGGGC
    CGGCTCGTCT CCGAGGGGTA CGTGCTCACC GTGCTCGCGC CCAACGACGA
    GGCCATGGCG CGCCTCACCA CCGACCAGCT CAGCGAGCCC GGCTCGCCGG
    AGAACATCCT GTACTACCAC ATGATCCCGG AGTACCAGAC CGAGGAGAGC
    ATGTACAACG CGGTGCGGCG GTTCGGCAAG GTGCGCTACG ACACGCTGCG
    GCTGCCGCAC AAGGTGGTGG CGCGCGAGGC CGACGGCTCA GTCAAGTTCG
    GCCATGGCGA GGGCTCGGCG TATCTCTTCG ACCCGGACAT CTACACGGAT
    GGCAGGATCG CAGTGCAGGG CATTGACGCC GTGCTGTTCC CGCCGGATGA
    CACCAAGACG GCGCCGGACA CGGCGCCGGT CAGGAGGGCG CCCGCCGTCA
    CCGGCACTCG CAAGAAGAAC AAACTCCGGA GAGGCAAGTT GTTAGAAGCA
    ACGTGCCAAA TGGCTGGCAT CCTTGGTCAG CGATTGCGAT TCGCAAGCTG
    CCAGTAGACG GCGAAAGATT GATCTCATGA TACCGAAACA CGAACTAGAA
    TGAGGTGATG GACTGTGCTG GAGCCGTCCA CATTACCATT TGTTTTTTTT
    TATTTTTATT TTTGTTTATT ATTACGAATA ATAAATCAGG TGGGGAATGT
    AATCTGGTGG CTGTTGGTGT CTGAAAAAAA AAAAGGCAGG AAAATGTTCA
    TACTTGAAGA CCGAGATCTT CTGTGTATAG GAGCGTTTTT TTTTATATTT
    TTTTCCGTCA TTTTTTCTTC TTTTTCTGTT TTGACAGAAT GCCGAGTAAA
    CAATTAAACA TCACAGCATC CTTGGTGTTA AAGCTAGTAG TAATCAATTC
    TGC

    Gene models with high sequence identity

    1. AT2G35860.1 [+] show detail - FASCICLIN-like arabinogalactan protein 16 precursor
      E-value: 4e-144; Score: 508.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart FAS1 domain 0.000000000000046
    HMMSmart FAS1 domain 4.9e-16
    ProfileScan FAS1 domain 18.577
    ProfileScan FAS1 domain 10.589
    superfamily FAS1 domain 3.3e-22
    superfamily FAS1 domain 7.9e-21
    HMMPfam FAS1 domain 1.7e-22
    HMMPfam FAS1 domain 0.00000017

    See the detailed result >

    AT2G35860.1

    Model type
    Protein coding
    Short Description
    FASCICLIN-like arabinogalactan protein 16 precursor
    Computational Description
    FASCICLIN-like arabinogalactan protein 16 precursor (FLA16); INVOLVED IN: cell adhesion; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 15 precursor (TAIR:AT3G52370.1); Has 1005 Blast hits to 970 proteins in 256 species: Archae - 17; Bacteria - 426; Metazoa - 148; Fungi - 43; Plants - 238; Viruses - 1; Other Eukaryotes - 132 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR