K13413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13413

Determination of introduced cDNA(s)

J023011B13 - Rice Full-length cDNAs - Original: J023011B13

full reading [+] show sequence

GGTTGCCCAA CTCTGTGCTC CGCCGTGTTG CCGCCGCCGC CATGGGCTCC 
TGCCTCTCCT CCGACCTGCC TCCCCGCGCC GGCGCCGGCG CGGGAGCGTC 
ACCCGGGTGG CCGCAGCGGT GGCGGAGGAG GAGGCAGCGG GGGGTGGAGC 
GGGGCGGGGC TGTTTCCGGC GGCGGCGGCG GCGTCTTCTC CATCGGCGTC 
GGCGGCAAGA AGCTGCACCA CGGCGGCGGA GGAGGAGGGG AGATGACGGA 
GGAGGAGCTC GCGAAGGTCG AGGGGAGGGT GTGCGTCAAC GGCGCGAGCG 
CGGCGGCGTG CCTGCACACG CAGCAGGGGC GGAAGGGCAC CAACCAGGAC 
GCCATGGTCG TGTGGGAGAA CTTTAATACA AGTGATAGTG TCTTCTGTGG 
TGTGTTTGAT GGTCATGGTC CATATGGTCA TTTTGTTGCC AAGAAGGTCA 
GAGATTCTCT TCCTGTCAAA ATACGCACAC TATGGAAAAC CAGTGCCAAC 
GAGGACACTA GTTCCCACCA AAATGGAAGC ATTTCTGGAA GTGTTAATTC 
AGAAGAGTCA CCTGTTGTTG ATGATGAATG GGGTGAATAT GCTGATGACA 
GCGAGAAGCT TCCTGAGATG TTTCTTCCAC TTAAGCAGTC TTATTTTAAG 
GCTTTCAAAT TGATGGACAA GGAACTCAAA ATGCACCCTA CAGTTGATTG 
CTTTTGCAGT GGATCAACAG CAGTCACGTT AGTAAAACAG GGATTGGATC 
TTGTGGTTGG GAACCTTGGG GACTCGAGAG CAATAATGGG GACACGAGAT 
GCTGCCAATA ATCTAACTGC TGTACAACTC ACAGTTGATT TGAAGCCTAA 
CCTTCCAAGG GAAGCTGCGA GGATCCAGCA GTGTAGGGGA AGAGTTTTTG 
CTCTTCAGGA TGAACCAGAA GTTGCCAGAG TATGGTTGCC AAATAATGAC 
TCTCCTGGAT TGGCAATGGC AAGAGCTTTT GGAGACTTCT GCCTTAAAGA 
TTATGGTTTA ATATCTGTTC CACAGATATC CTATCGTCGT CTTACTGAAA 
AGGATGAGTT CATAATACTG GCCACTGATG GGGTTTGGGA CGTCCTCTCA 
AACAAGGAGG CTGTTGACAT AGTAGCCGCA GCTCCATCTC GTGCAACGGC 
TGCCAGGGCT CTTGTCGACT GTGCTGTCAG ATCATGGAGA TTGAAGTTCC 
CAACATCCAA GAGCGATGAC TGCGCTGTTG TGTGCCTATT CTTAGACCAT 
GCAAAGTCAC CTGACTTGAT TCAAGAGAAC GAGAGCGAGG AAGAAACTAC 
AGAGGATGTT GCAATCCCAG ACACCGTTGC TAAGGTTGAC CAAGACATTG 
C

Gene models with high sequence identity

AT1G16220.1 [+] show detail - Protein phosphatase 2C family protein
E-value: 5e-125; Score: 444.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein phosphatase 2C, N-terminal	3.2e-39
Gene3D	Protein phosphatase 2C-related	6.4e-58
superfamily	Protein phosphatase 2C-related	5.3e-60
HMMSmart	Protein phosphatase 2C-related	1.1e-63
HMMPanther	PROTEIN PHOSPHATASE 2C DELTA	3.2e-134
HMMPanther	Protein phosphatase 2C	3.2e-134

See the detailed result >

AT1G16220.1

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Computational Description: Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G79630.1); Has 5547 Blast hits to 5545 proteins in 292 species: Archae - 2; Bacteria - 12; Metazoa - 1332; Fungi - 643; Plants - 2421; Viruses - 5; Other Eukaryotes - 1132 (source: NCBI BLink).
Link: InterPro Scan - TAIR