K13414

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13414

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13414

Determination of introduced cDNA(s)

  • J023055C13 - Rice Full-length cDNAs - Original: J023055C13

    full reading [+] show sequence

    Nucleotide sequence: J023055C13 - full reading
    GTGTGGCCGG CGCGTTGGGA GCTCTGAGCG GAGGCGGGCG GCTGCGCGGC 
    CATGGAGGGA CGCGAGCGCC GCCGCAGCAT GTCGTCCTCG TCGTCCGGGA
    GGCGCACGCC GGAGCTGGAG AGGGAGCGAT GGGCGCCGTG GAGCCCCGCC
    CCCACGTGGT CGCGGCCGCT CTCCGTCGGG GGCGGCGGCA GTAGGGCGGC
    GTCGCTCAAG TCGCTCTTCA GGACGATCGG GTTGTGGTTC AGCTCGCTCT
    CCACCTCCTC CTCCTCCTCG TCGTCGGCGG CGGCCACCTC CGCCTCCGGC
    AGCAACGCTA AGAGGAGGAG CAGAAGAGAG CCCAATGACT TGATCAAGAA
    GCCGCCATTG CCGGGGCCTG GCAGTGATCA GGGGAAGGCG TCGATGCGCG
    GGCTGTACAA CAGCAGCAGG GGAAGAGGCA TCGCGACGCA GTTCCAGAGC
    TCGGTGTTCT CCATGGAGGA GATCCTGCGC GCCACCAACA ACTTCTCGCC
    GGCGCTCAAG GTCGGCCAGG GCGGCTTCGG CGCCGTCTAC AGGGGCGTCC
    TCCCCGACGG CACGCTCGTC GCCGTCAAGC GCGCCAAGCT CCGGGACCAG
    AACCCGCACG TGGACGTGGA GTTCCGGAGC GAGGTGAAGG CCATGGCGCG
    CATCGAGCAC CAGAGCCTCG TCCGCTTCTA CGGCTACCTC GAGTGCGGCC
    AGGAGAGGGT CATCGTCGTC GAGTTCGTCC CCAACGGCAC GCTCCGCGAG
    CACCTCGACA GGTGCAACGG GAGGTTCTTG GACATGGGCG CGCGGCTGGA
    GATCGCCATC GACGTCGCGC ACGCGGTGAC GTACCTGCAC ATGTACGCCG
    ATCACCCCAT CATCCACCGC GACATCAAGT CGTCGAACGT GCTGCTCACC
    CCGTCGCTGC GCGCCAAGGT GGGCGACTTC GGGTTCGCGC GGCTGGGCGT
    CGGCGAGGCC GGCGCCGCCG ACGGCGTGAC GCACGTGACG ACGCAGGTGA
    AGGGCACGGC GGGGTACCTC GACCCGGAGT ACCTCAAGAC GTGCCAGCTC
    ACCGACCGGA GCGACGTCTA CTCCTTCGGC GTGCTGCTGC TGGAGATCGC
    CTCCGGGCGG CGACCCATCG AGGCGAGGCG GGAGATGCGG GAGCGGCTGA
    CGGCGCGGTG GGCGATGCGC AAGCTCGCCG AGGGCGCGGC GGCGGACGTG
    CTGGACCCGC ACCTGCCGCG GACGCCGGCG ACGGCGCGCG CCGCGGAGAT
    GGTGATGGAG CTGGCGTTCC GGTGCCTCGC CCCCGTGAGG CAGGAGAGGC
    CGAGCATGGG CGAGTGCTGC AGGGCGCTGT GGGCGGTCAG GAAGACGTAC
    AGGGACATGG TGGTGGCCGC CGCCGGCGAC GAGACGCCGC TCTCGTCCAT
    CTCCGACCGG GCCAGCTCGT CGTCCGCCGG CACCGGCGGC GACCGGAGCG
    GCGAGCTCTG GAGGAATTAA TCAACGTTTT GCTGTAAATA TGCAAAAGCG
    AAAGTATTCG TTAAAATTCT GCTCATGTGT TGATGTTGTT TGTGT

    Gene models with high sequence identity

    1. AT4G00330.1 [+] show detail - calmodulin-binding receptor-like cytoplasmic kinase 2
      E-value: 6e-98; Score: 355.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 36.909
    HMMPfam Serine/threonine-protein kinase-like domain 2.8e-44
    HMMPanther WALL-ASSOCIATED KINASE 1.2e-145
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.2e-145
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 3.7e-36
    HMMSmart Tyrosine-protein kinase, catalytic domain 9.1e-26
    Gene3D no description 2.7e-19
    Gene3D no description 5.3e-44
    superfamily Protein kinase-like domain 7.5e-73

    See the detailed result >

    AT4G00330.1

    Model type
    Protein coding
    Short Description
    calmodulin-binding receptor-like cytoplasmic kinase 2
    Curator Summary
    high overall homology to CRCK1
    Computational Description
    calmodulin-binding receptor-like cytoplasmic kinase 2 (CRCK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calmodulin-binding receptor-like cytoplasmic kinase 1 (TAIR:AT5G58940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR