K13419

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13419

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13419

Determination of introduced cDNA(s)

  • J013096O03 - Rice Full-length cDNAs - Original: J013096O03

    full reading [+] show sequence

    Nucleotide sequence: J013096O03 - full reading 
    GGTTTTCCTC CACCGATGGC TCCTTCCACG AGTCTCCTCT CCTGGTCCTC 
    CTCCGACGAC GACGACGGCG CCGGCGCCGG CGGCGAGCTG TCCCGCCCTC 
    GCAGGCGGTG GCGGGCGCTT GTCCTGGGGC TCGGGGTGAG GAGGAAGAGG 
    AGCATGGAGG GGGTGTTCGG GTTCAGGGAG ATGATGGGGG AGGAGTTCAT 
    GGGCATGTTC CTCCCCTTCT TTGGCAAGAT GGTTCAGAAA GTGGTTTCAG 
    AAGAAGTAGA GAAAGCAATT TTCAGACAAG TCAGCACACC AGCGCCTCCA 
    AGACTGCTAG CAGGATTGAA TCAGCAGCGT CCAAGGTATC AACTCGTGTT 
    CCTGAATGAA CTAAAGCCTG TTTACACACT GATGAAATTA GAAGCCAAGG 
    ATGGACCGGG TCTTAAGGTG GCTATAGTCG AAAGACTCGA AAACAATCAG 
    ATGCGCATCG TCAGGTTCGG TCATCTTGCT TCTGCTAAGG TTGAAGTTGT 
    AGTCCTCCAC GGCAACTTTA ATGCTAAAAA TGAGGAACAA TGGACCCCTG 
    AAGACTTCAG CAAGCAGATA GTATGCGGGC GAGAGAAAAG CGCACAACTT 
    CTCACCGGAA ATCTGACACT GAAGCTCAAT GGAGGGGAAG CATTACTTGA 
    GAATGCAACC TTCACTGATA ACTCTAGCTT CACTAGCACT AAGAAGTTCA 
    GGCTGGGTTT GAGGCTAGCC AACAATTCTG AAGATAGGGT TCTTGAAGGA 
    ATCACTGAAC CTTTTCGTGT AAAGGAGCGT AGGGTGGAGG GATTTGAAAA 
    GCACTACCCG CCAATGTTGG ATGACGAAGT TTGGCGTTTG GAAAAGATCG 
    GCCGCAATGG AGCTCACCAC CAGGCCTTGA CAAACAGTGG AGTTGATACT 
    GTACAGAAGT TCTTACAATC ATATTTTACG GACGAAAAGA AGCTTTTTCA 
    GACTTTTAGC AAGATGTCAC AGGCAGCTTG GAAAACCATC ATAAGCCATG 
    CCATGACATG TGAAGTCGGT GACGATCTTT GCTTGTATGA AGTGAAGGGC 
    AACAACGTGG GACTTTTCTT CGATGCAATA TATCAGCTTG TTGGGGTGAA 
    GTTTGGTGAT TCTTACAAGC CCATAAATGA GCTCGACGAA ATAGAGCAGA 
    GTGCAGTTGA AACAATGAAG CAATTGGCTT ATGCGAATAT AAGTGGTATT 
    CAGTATGACC ATAAGATGGT CAACAACTAT CCTGTACCGC TTCATAGGTT 
    CCATTGTGGG GGAACTTCTA TGTTGACTGA CTTTATTCCT AAACAGCAGA 
    TCCCAACTTG TGGTCAATAC AATTCAGCCC TGGCTGGTCA ACCATTTGAA 
    TCAACGGAGA ACTTTTCTTC ATTCCAAGAA GCCTCTAATG CTTCAGTGGA 
    TATGTCAAGA TTTGTGCAGG GTCAAACCTC CAACGTGCAG TTTAGCCAAC 
    AGTTGGGCAT GGGCAATTTT ATCCCACATC ATTCAAATCA AGGAACATTC 
    ATACCCAGAC CAAGAATCAC TCCTCTGTGT ATACCTAATA CCGAAAAAAC 
    ATATTTTAAT CCAAACGCTC ATAGCAGCAT CCAGGCTGAT CATGCTGCCA 
    CACGAATTGG CCAGTATGCA CATAATGAGC GATCTCATTC ACCTGAAGAA 
    TCATACAAGC GCTTTTCTCC AGATAATTTC CTCCATACAG ATGAAGTTGT 
    GGCTTTGATG CAACCTCACT TAGTGCCTCC AAGCAACAGC GAGAATTTCA 
    GTAACCTGCT CAACCTATCA AGCAATGACC AAACCTCACA GCAAATTGCC 
    GCTCCATTCC AGCCATC

    Gene models with high sequence identity

    1. AT5G57580.1 [+] show detail - Calmodulin-binding protein
      E-value: 3e-50; Score: 196.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G57580.1

    Model type
    Protein coding
    Short Description
    Calmodulin-binding protein
    Computational Description
    Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 341 Blast hits to 322 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR