K13419

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13419

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13419

Determination of introduced cDNA(s)

  • J013096O03 - Rice Full-length cDNAs - Original: J013096O03

    full reading [+] show sequence

    Nucleotide sequence: J013096O03 - full reading
    GGTTTTCCTC CACCGATGGC TCCTTCCACG AGTCTCCTCT CCTGGTCCTC 
    CTCCGACGAC GACGACGGCG CCGGCGCCGG CGGCGAGCTG TCCCGCCCTC
    GCAGGCGGTG GCGGGCGCTT GTCCTGGGGC TCGGGGTGAG GAGGAAGAGG
    AGCATGGAGG GGGTGTTCGG GTTCAGGGAG ATGATGGGGG AGGAGTTCAT
    GGGCATGTTC CTCCCCTTCT TTGGCAAGAT GGTTCAGAAA GTGGTTTCAG
    AAGAAGTAGA GAAAGCAATT TTCAGACAAG TCAGCACACC AGCGCCTCCA
    AGACTGCTAG CAGGATTGAA TCAGCAGCGT CCAAGGTATC AACTCGTGTT
    CCTGAATGAA CTAAAGCCTG TTTACACACT GATGAAATTA GAAGCCAAGG
    ATGGACCGGG TCTTAAGGTG GCTATAGTCG AAAGACTCGA AAACAATCAG
    ATGCGCATCG TCAGGTTCGG TCATCTTGCT TCTGCTAAGG TTGAAGTTGT
    AGTCCTCCAC GGCAACTTTA ATGCTAAAAA TGAGGAACAA TGGACCCCTG
    AAGACTTCAG CAAGCAGATA GTATGCGGGC GAGAGAAAAG CGCACAACTT
    CTCACCGGAA ATCTGACACT GAAGCTCAAT GGAGGGGAAG CATTACTTGA
    GAATGCAACC TTCACTGATA ACTCTAGCTT CACTAGCACT AAGAAGTTCA
    GGCTGGGTTT GAGGCTAGCC AACAATTCTG AAGATAGGGT TCTTGAAGGA
    ATCACTGAAC CTTTTCGTGT AAAGGAGCGT AGGGTGGAGG GATTTGAAAA
    GCACTACCCG CCAATGTTGG ATGACGAAGT TTGGCGTTTG GAAAAGATCG
    GCCGCAATGG AGCTCACCAC CAGGCCTTGA CAAACAGTGG AGTTGATACT
    GTACAGAAGT TCTTACAATC ATATTTTACG GACGAAAAGA AGCTTTTTCA
    GACTTTTAGC AAGATGTCAC AGGCAGCTTG GAAAACCATC ATAAGCCATG
    CCATGACATG TGAAGTCGGT GACGATCTTT GCTTGTATGA AGTGAAGGGC
    AACAACGTGG GACTTTTCTT CGATGCAATA TATCAGCTTG TTGGGGTGAA
    GTTTGGTGAT TCTTACAAGC CCATAAATGA GCTCGACGAA ATAGAGCAGA
    GTGCAGTTGA AACAATGAAG CAATTGGCTT ATGCGAATAT AAGTGGTATT
    CAGTATGACC ATAAGATGGT CAACAACTAT CCTGTACCGC TTCATAGGTT
    CCATTGTGGG GGAACTTCTA TGTTGACTGA CTTTATTCCT AAACAGCAGA
    TCCCAACTTG TGGTCAATAC AATTCAGCCC TGGCTGGTCA ACCATTTGAA
    TCAACGGAGA ACTTTTCTTC ATTCCAAGAA GCCTCTAATG CTTCAGTGGA
    TATGTCAAGA TTTGTGCAGG GTCAAACCTC CAACGTGCAG TTTAGCCAAC
    AGTTGGGCAT GGGCAATTTT ATCCCACATC ATTCAAATCA AGGAACATTC
    ATACCCAGAC CAAGAATCAC TCCTCTGTGT ATACCTAATA CCGAAAAAAC
    ATATTTTAAT CCAAACGCTC ATAGCAGCAT CCAGGCTGAT CATGCTGCCA
    CACGAATTGG CCAGTATGCA CATAATGAGC GATCTCATTC ACCTGAAGAA
    TCATACAAGC GCTTTTCTCC AGATAATTTC CTCCATACAG ATGAAGTTGT
    GGCTTTGATG CAACCTCACT TAGTGCCTCC AAGCAACAGC GAGAATTTCA
    GTAACCTGCT CAACCTATCA AGCAATGACC AAACCTCACA GCAAATTGCC
    GCTCCATTCC AGCCATC

    Gene models with high sequence identity

    1. AT5G57580.1 [+] show detail - Calmodulin-binding protein
      E-value: 3e-50; Score: 196.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G57580.1

    Model type
    Protein coding
    Short Description
    Calmodulin-binding protein
    Computational Description
    Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 341 Blast hits to 322 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR