K13422

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13422

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13422

Determination of introduced cDNA(s)

  • J033127M05 - Rice Full-length cDNAs - Original: J033127M05

    full reading [+] show sequence

    Nucleotide sequence: J033127M05 - full reading 
    GAGTCGCCGC TGTCTTGCGG CCTCCTCCGG TCCAAGCCCC CTGATCCCCT 
    GACCTCAAAG ATGGCGGCGG CGCTGTCCAA GCTCCTCCGC CGTCGGCTGC 
    GCGGCGGCGG GCACCGCCTG CTCCCGTCCC GTCCCTCCAC CTCCGCCGCC 
    TCCCAGCCAC CTCCGCCGCC TCCTTCCGCC GCCACACCGC CACCACCAGG 
    GGCAGGGAAG GAGGCGGGCG CGTGGTCCAA GCTCTTCCTC TTCGCCCCCG 
    GCGCCATCAC CTTCGGCCTC GGCTCATGGC AGCTCTTCCG GAGGCAGGAG 
    AAGATTGAGA TGCTGGACTA CAGGACGCGG AGGCTGGAGA TGGAGCCCAT 
    TGCGTGGAAC CAGATGGCCC CGTCTGATCT CAGTGCCGGG GTCGATCCGG 
    CCACACCGGA GTTCCGGAGG ATCGTGTGCG AGGGTGATTT CGACGAGGAG 
    AGGTCGGTGT TCGTCGGGCC TCGCTCCAGG AGCATCTCTG GTGTGACGGA 
    GAATGGGTAT TATGTGGTCA CTCCATTGAT ACCCCGGCCT AGTGAGCATG 
    GCAGTTCGTG GCCACCTATA CTTGTGAATA GAGGGTGGGT TCCTCGTGAT 
    TGGCGTGATA AGAACGTACA GGATCACCAG GGCGTCAGAG AAGTTCCAGA 
    ATATAAAGAG GCTGATAAAA AGACAGATGG AAAAGGTTCA TGGTGGAAGT 
    TTTGGTCTAA CTCTAAGGAG CCTGAACAAT CTTGTGAGAT TGAAAAACCT 
    GTAAAACCTC CTGTAAGAGT TTTGGGAGTT ATCCGAGGAA GTGAGAAGCC 
    CAGCATATTT GTTCCAGCTA ATGAACCCAG TGTTGGCCAG TGGTTTTATG 
    TGGATGTTCC CATGATTGCT CGTGCATGTG GCCTCCCTGA AAATACTATT 
    TATATAGAAG ATATAAATGA GGATGTCTCT CCAACAAATC CTTATCCTGT 
    TCCAAAAGAT GTCAGTACTT TGATTCATCA CTCAGTGATG CCACATGACC 
    ATCTAAAATA CACCGTTACA TGGTACACTC TTTCTGCTGC TGTGACTTTC 
    ATGGCTGCAA AGCGGATAAA GGCAAAGAAG GTTAAGTTAT AGCGGAACAT 
    AAACCTGTCT CCTGCATCTT GTACTTATTT ATGAAGCTCA AGTTCCCGCT 
    GCTTCAGAAA GAGATGTTCG ATAACCTGAG TACTGCATCT TCATCTCTCA 
    GGCAATGATC AAAGTAGTCT TGCCACATTT GATATGATGT GCATCCATAT 
    GGGCATCTCG TAGTTGAACT CAGAGGATAG AAAAGTTTTG TTAGCAGCTT 
    CTGATATCCT TGATTCTTTT GTTACGGAAC TTACATTGAG GAAACAACGT 
    AGACATTGTT ATTTGTTTCT ATTCTTTGTA GTTTTTTTGT TCAATGAGCT 
    AGTCGTCCAC GAGGTTGATG GTGCTTGCAG AAGCAATTTT ACAGTACTTG 
    CTGATTTTAT CTGAAAAATA AAAACATCGA ATCTGTT

    Gene models with high sequence identity

    1. AT3G17910.1 [+] show detail - Surfeit locus 1 cytochrome c oxidase biogenesis protein
      E-value: 2e-94; Score: 343.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SURFEIT LOCUS PROTEIN 1 4.9e-27
    HMMPanther SURFEIT LOCUS PROTEIN 4.9e-27
    ProfileScan Surfeit locus 1 34.639
    HMMPfam Surfeit locus 1 2.4e-54
    Coil coiled-coil 0

    See the detailed result >

    AT3G17910.1

    Model type
    Protein coding
    Short Description
    Surfeit locus 1 cytochrome c oxidase biogenesis protein
    Curator Summary
    Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly.
    Computational Description
    SURFEIT 1 (SURF1); CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: Surfeit locus 1 cytochrome c oxidase biogenesis protein (TAIR:AT1G48510.1); Has 1714 Blast hits to 1712 proteins in 488 species: Archae - 0; Bacteria - 777; Metazoa - 126; Fungi - 127; Plants - 43; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR