K13425

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13425

Determination of introduced cDNA(s)

  • J033033C01 - Rice Full-length cDNAs - Original: J033033C01

    full reading [+] show sequence

    Nucleotide sequence: J033033C01 - full reading 
    GGCGTGGAGT GAAGCGGAGG AGAAGGAAGC ATCGCATCCG CCTCCGATCC 
    GGCGATGGCG AGGGCGCCGC CGCCGCTGTC GTCGTTGCCG CCGCCGCCGC 
    GCCGGCCCAC GGTGGTGCTG CTTCTGGGGC TGGCCCTCGC CTTCTGCCTC 
    GCCGTCCTCT CCATCCAGTC CTCATTCTTC ACCGCTCCGA GGCTGGCGAG 
    TAGGCTGGAT CTGGACTCCG ACGAGGTCCG CGCGCTCTCG GGCTTCCAGT 
    CCCGCGTCCA GCAGTGCGTG GCAAGAAGGG GACTTGGCCT CACAGCAGAT 
    ATTATTGATC ATTGCAAGCT AGTCCTTAGA TTTCCTAAAG GAACCAACAG 
    CACTTGGTAC AACACTCAGT TCAAATATTT TGAACCACTA GAATACAACT 
    ATGATGTCTG TGAAACTATC CTTCTGTGGG AACAGTACCG TAACATGACG 
    ACTGTGTTGA CAAGGGAGTA CTTAGATGTG CGACCTGATG GGTGGTTGGA 
    TTATGCAGCC AAAAGGATTG CACAGCTCGG TGCTGACAAA TGCTACAATC 
    GTACTTTGTG CGAAGAGCTT CTTAGTGTTT TACTCCCTGC TAAGCCTCCT 
    TTTCATCCTC GCCAGTTTGC AACATGTGCT GTTGTTGGTA ACTCAGGGGA 
    TCTCTTGAAA ACAGAGTTTG GACAAGAGAT TGATGCACAT GATGCTGTGT 
    TCCGAGATAA TGAAGCACCT GTTAATAAGA AGTATGCAAA ATATGTTGGG 
    TTGAAAAGGG ACTTTCGACT GGTTGTCAGG GGTGCTGCTC GAAACATGGC 
    GCCAATACTA AAGGGCTCCT CTGATGAGGT TCTTATTATA AAAAGTTTGA 
    CGCACAAAGA AATCAATGCG GTGATAAAGG AACTTCCAAA CCCAGTTTAT 
    CTTTTTCAAG GCATAGTCTT GAGAAGAGGT GCTAAAGGGA CTGGTATGAA 
    GTCAATAGAA TTGGCCCTTT CCATGTGTGA TATTATCGAC ATGTATGGAT 
    TCACAGTTGA CCCTAACTAC ACAGAATGGA CAAGGTACTT CTCACCCCCA 
    AGGAAAGGAC ACAATCCACT GCAAGGGCGG GCTTATTATC AACTTCTGGA 
    GTGCCTTGGA GTAATTCGAA TCCATTCCCC CATGAGAGCA AAGAGGGTAG 
    AAGATTGGTC GGATATACCT AGCAGGGAAG AGATCAGAAC AGCGCATGCT 
    GCGGCTTTTC GTTTAAAAAG GCATGAAACT GGTCAATCTG ATCAAATGGG 
    GCCATTTAGC AACTGCAAGG TATGGGGAAC AGTTGACCCA GATTACGGAC 
    CTGTATCAGG AACTCCAGAC ATGAGCGAAA CACGAAAGAG CTCAAACTAC 
    AAGAAGTGGG AGGTACTCCC ATTCGACAGC TTACGAATGG AGGCTCAGGA 
    ACACCATGTC CAGATGGGCG GCGTATCTCT GTACAAGATG GATGGAAACA 
    AGCTAGATGA TCTTGTTTGT GTGAGACATG AACGTTCATC TAGTTAAGTC 
    AGCACTTAAT CTTTGCCTGG AGATGGCATC TTGACCCTGT GGTAATCTTC 
    AGAGGCATAT CTACTTGTCA GTTGTAAGAT CACAAGAGGC AAAGGATTGA 
    GGCTATTCTT TAGGGTTTCT CATTCCCCTG ACAGAAAATA TTCTTTTATT 
    GGTTTCTTAG CGACTTTGTA GGGATATTTG CTTAATCAGT CGGAAGAATG 
    TTCCGCTATG GGTACAGCTG TAACGATTTT GGTGCCACTT GCAACATGTA 
    CTAGCCATCA CGCAATTCTG AACTGCAGTT TTGTTGTTGA GCTAGTAACC 
    TACACCCTGA ATTGTAGTAC TATAGTTTTT GTTGTTGACA CATGTTTTCA 
    TTTCACAATG CCATATAAGT GAAAGTCATG TTTGTTTTGT TATTG

    Gene models with high sequence identity

    1. AT1G08660.1 [+] show detail - MALE GAMETOPHYTE DEFECTIVE 2
      E-value: 0; Score: 719.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl transferase, family 29 4.5e-25
    HMMPfam Glycosyl transferase, family 29 2.4e-12
    HMMPanther ALPHA-2,8-SIALYLTRANSFERASE 8B (ST8SIA II) 4e-16
    HMMPanther ALPHA-2,8-SIALYLTRANSFERASE 4e-16

    See the detailed result >

    AT1G08660.1

    Model type
    Protein coding
    Short Description
    MALE GAMETOPHYTE DEFECTIVE 2
    Computational Description
    MALE GAMETOPHYTE DEFECTIVE 2 (MGP2); FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1); Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 1325; Fungi - 0; Plants - 155; Viruses - 13; Other Eukaryotes - 36 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR