K13429

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13429

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13429

Determination of introduced cDNA(s)

  • J023050O07 - Rice Full-length cDNAs - Original: J023050O07

    full reading [+] show sequence

    Nucleotide sequence: J023050O07 - full reading 
    GAGAGGCTTA TCTGTTGCCA CATGGCCACA CCAAGTCCAA ACCCTCACCT 
    CTCCATGTCC ATCAATGGAG GAGCCACCGT TTCGGCTGGT TGGGCGGCCA 
    CCCAACCTCG CCGGCGACGA ACAGTGGATC ACAGTAGCAG AAGCTGCTTA 
    CTTCGACCAT CATATGGATC TACCAGAGGC TTCGGTACGA GGAGAATTGC 
    AGTTCGTTCT GCCTCCCAGA AGAACTCGTC TCCTCCATTG ATGACCACTG 
    AGCAAGAAGC CGAAGACGAG GTGGTGCTAG AGTCGCCGGC GCACTTCCGC 
    ATCTACAAGA GCGGCAAGAT CGACCGCCTC AACCGGCCAC CCGTCCTGCC 
    CGCTGGTCTC GACGAGGCCA CCGGCGTCAC CTCCAAGGAC GTCGTCCTCG 
    ACGCCGACAC CGGCGTCTCC GTCCGCCTCT TCCTCCCCAA GCTTCAGGAG 
    CCCTCCAAGA AGCTCCCCGT CGTCGTCTTC TTCCACGGCG GCGCGTTCTT 
    CATCGAGTCG GCCGGCTCCG AGACGTACCA CAACTACGTC AACTCCCTCG 
    CCGCGGCGGC CGGTGTCCTC GTCGTGTCCG TCGACTACCG GCTCGCCCCG 
    GAGCACCCGC TCCCCGCGGG CTACGACGAC TCGTGGGCGG CGCTCCAGTG 
    GGCGGCCTCG GCGCAAGACG GATGGATCGC CGAGCACGGC GACACGGCTC 
    GCCTCTTCGT CACCGGCGAC AGCGCCGGCG CCAACATCGC GCACGAGATG 
    CTCGTGAGGG CGGCCGCCAG CGGCGGGCGC CCGAGGATGG AGGGCGCGAT 
    CCTGCTGCAC CCGTGGTTCG GCGGGAGCAA GGAGATCGAG GGGGAGCCGG 
    AGGGCGGCGC CGCGATCACC GCGGCGATGT GGAACTACGC GTGCCCGGGC 
    GCCGCCGCCG GCGCGGACGA CCCGCGGCTG AACCCGCTGG CGGCCGGCGG 
    GCCGGTGCTG GAGGAGCTCG CGTGCGAGAG GATGCTCGTG TGCGCGGGGG 
    GGAAGGACGT GCTCGCGGCG AGGAACCGCG CGTACTACGA CGCCGTGGCG 
    GCGAGCGCGT GGCGCGGGAG CGCGGCGTGG CTCGAGTCGG AGGGGGAGGG 
    GCACGTGTTC TTCCTGGGGA ATTCGGAGTG CGAGAATGCC AAGCAGCTCA 
    TGGATCGCAT CGTGGCGTTC ATAGCCGGTG GATGAGCTGC TTGGATCGTA 
    TATAAGTCAA CATTGAAGTT GAATCGAGTT ATTTGTTCAC TCATCATTCA 
    CTGGGTTGAA ATCGAATCGA AGTAAATAGT GTACAAACAC TACTAAGCTT 
    TCGAAGGTGA AACTGAAATT GATTGCGTGC CGC

    Gene models with high sequence identity

    1. AT1G47480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 5e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.5e-67
    HMMPfam Abhydrolase_3 1.3e-46
    HMMPanther CARBOXYLESTERASE-RELATED 1.5e-91
    HMMPanther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES 1.5e-91
    superfamily alpha/beta-Hydrolases 3.2e-60

    See the detailed result >

    AT1G47480.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 13 (TAIR:AT3G48700.1); Has 8596 Blast hits to 8578 proteins in 1414 species: Archae - 104; Bacteria - 4918; Metazoa - 486; Fungi - 808; Plants - 1365; Viruses - 3; Other Eukaryotes - 912 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR