K13435

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13435

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13435

Determination of introduced cDNA(s)

  • J023091L02 - Rice Full-length cDNAs - Original: J023091L02

    full reading [+] show sequence

    Nucleotide sequence: J023091L02 - full reading
    TTGGGGCCCA ACAAGCCAAC AAATAGGGAG TAGTGAGGCC TTGTACAACC 
    CGACGGAGTG AGAGGGACCC AAGCCGACAA ATCCCTAGCG CCCGCGACTC
    CGCAAATCGT GACCGGCGGC GATCGATCGA TCGATGCCAC CGAAATTGCG
    GAGGAGGTCG ACGGGGGCGG CACTATCCCA CGCCGCGAGT GGAGAAGAAG
    CTCCCAAATC ATCGGAAACG AGTCCTGCTC CAGCGGCGGC GGCGGCGGGC
    AGTGGAAGGT GGACTCGATC TAGATCAGCG AGGAGTCACC TAGGGTTGGA
    TTCGGATTCT ACCGACCACC CTAGGGTAGT GTCGGGCTCT TCTGATCAAC
    CGCCGAAGAA GAGGAAGAAG ACGACAACGG CGGTGGCCGC CGCCGCCGGC
    AGTACAAGGC TGGCCTCCCG GCCGGTCCCT GGTCGCTACC CGGATTACCC
    CAGTTTACGG CCAGGGCAAC ATGCTCTTAG CAAGAAACAC ATGAGTGCTG
    TTCAAGAATG GATGGAGGAG TGCAGCAGGA TCAGCAAGCT CGAGAAACAA
    GCTCGTCCTG AAGATATCCC CACTCTCAGA GATAACCCCC GGGATCCCCT
    CACTCCTGAT GCCGTGGTCA GCTCACAAGA CAAGGCCATG GTGCTGCGTG
    TGGCTCGTTC CGTTGTCAGT GTTTCATCCT CAAAGCCTGA TGGGGAACTG
    ATTTCCCAGT GCACCGGCAT CGTGATTGGT TGGGATGGGG CCAACAAGTG
    CGCCAAGATC CTGACCTCTT GTTCTACGGT GTGCGACTTC GACGGTGAAT
    TTATTCAAGC TATCCGTTCG TATGCCAAAT AGGACAATTA CAGAAGGACG
    GTTGTTATTC TTCAATGTAC ACTATGGTAT CGCTCTTTTG GAGGTCAAGG
    GAGACTTCCA GTTGCAGGTC CCTTCTTTTG GCTTGGGCAT AAACTATGGC
    CAGGATGTAT TTGCATTGGC TAGGGATGAA AACATGTCCT TAATGGTTAG
    GCATGGAACA ATTTCATGGC TGGATTATCC TGGGTTATTG ACCAATCCCT
    ATATGTTTCT GAGTTGTGAT ATTCCCGAGG GTGGTTCAGG AGGGCCGGTG
    GTTGACCATG ATGGTAATAT CATTGGAATT GCATTTGATA GAAACCCGGG
    TCCGGTTGTT ATCTCTATCA CTACAATCAG AACTTGCATT GAGATGTGGC
    ATCAGTTTAG CCGTGTTGCT CGTCCCATGC TTGGCATGCA ATTGAAGGCT
    GTGGAACTAC TGGATGTCTC TATGCGGGAG GAACTTTGTC TTGAGTACAA
    TATCACCGGC GGTTTCATTG TGAATCTGGT AAAAGTTGAT TCTACTGCTG
    AGAGAATCGG TATTAGACGA GGGGACGTGA TTGTTTTTAA GGATAACCGT
    TGTTCTACTT TACCTCAGTT AGAAGATTAC CTCCTTTCTC TTGGTTGGGG
    ATACCTGCAG GGCTTAAGCT TTACAGTAGA TCTCAAGGTT GAAGTTCATA
    ATCTCGCCGA CTCATATAAG GAAAGCATTA CTTTCCCTGT ACCGTTCTCT
    GATGCTTCTA AGCGGGTTGA CTGATGGTGT ATATGACAGG TGCTATAAGA
    TTGAAGTCTT AGAGATGCTG TAAGATTGAA GTCGCCTAGA GTTATATGAC
    TGACCAAAGG ATATGTAATA TACTTCTTTT AGGATAATTT ATCAAGTCAT
    GTTATCAGCG ATGTAACCTC ATTGCCTAAA TGGTTGTGCT AATATTTTAT
    ATGAATATTC TGCAATGGTG AGATTTAGTA ATTTACAAGA TGAGCAATAA
    ACACAAATGC AATGTAAGCT TGATAGAATT TTTTGAGGTA AAACAAAAAA
    AACAAACCTA AGTTACAGGA TATGACACCA AACAAAATTG ATAGTCCCAT
    AGTATTCCAC ATAACCCTAT TGATGGAGTT CAAAATCTTG CAGTTCAGCA
    CATACTCCGG CTTAGGTTGT TGCTTCATCA ATAAGCACAA TATTACTTTG
    GCTGTGAAGC TTAATTATGG CTTTGCCCAG TATGGTTGAT TGCACAAAGG
    TTGATGGGCC TAGATGACGA GGACAAAATG TGGAGTCTTA TAGAAGAAGT
    GTGGGTGGAG ATGCTCTTCT TCTCCGCTGG TAGATGTCGA GGATACTTGC
    ATGCCAAGAG CCTTGGATCA GGCGTTGATA TTGTGGCTCC TGTTGGCACA
    TGCAGGAATG GAGGCATTCC CTGAGAGGCT TCAGAGGAGA CAATAGTGCC
    GCTTGCTGAA AAGGAAGCCT CGGGAGAACA GACAAGATGG TGGCACTAGT
    CCTTCAAATT CCCGAGATTT CAAGCCTCTC AGAGCAAGTA TAATAGTGAG
    CTATAAGCTT GCTATAAGCT TATGTGGAGG AGAGAGGTAA CAAAAAATCA
    AAGGTGTTGG CTCTCATGCA AGAGCTAACT TAACACAAAC TCCAAGACAA
    AAACAATAAA TGTATAAGTG AGAGATAGAG ATAGGAGAAG AAAATTATAG
    CTAAACCTTA TAGCTAATCT ATTATATGTG TTAGCTTTAA GATAGGCTAA
    TACTCCAGTA GATAGTGAGC TCTATTATTA TCCTTGCTCT CAATATCGAT
    GAAGAAGATG CAGCTACTCC ATCTGGAACT TCCCAAGGCA CAGAGTCTTG
    TAATAGCTAA CTATTGTGCA CACTAACTCT TGTTAAACTA AATTTAGTTG
    ATGTATCAGC TCATCCCCCT AGGTGAAGGC AGTAATTCCC ATGAGCTCAA
    GGAGATTGTT GTCTCACCAT AGCAACATGC AGCTTCATCA TTGTTTGCGT
    AATTGCGTTT AGTGTGTAAT TGTCTTAATA TGCCAGTGTA ATGTTAATGT
    CCGTTCCATT TGTTGTATAC CATGTCAGTG AATCAAATTC ATATAATTGT
    GCC

    Gene models with high sequence identity

    1. AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
      E-value: 6e-09; Score: 60.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR22939 1.89999859865843e-11
    superfamily Serine/cysteine peptidase, trypsin-like 2.4e-21
    HMMPfam Peptidase S46 0.07
    Gene3D G3DSA:2.40.10.10 1.60000065022528e-08
    HMMPfam Protein of unknown function DUF594 4.7e-14

    See the detailed result >

    AT5G27660.1

    Model type
    Protein coding
    Short Description
    Trypsin family protein with PDZ domain
    Computational Description
    Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR