K13435

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13435

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13435

Determination of introduced cDNA(s)

  • J023091L02 - Rice Full-length cDNAs - Original: J023091L02

    full reading [+] show sequence

    Nucleotide sequence: J023091L02 - full reading 
    TTGGGGCCCA ACAAGCCAAC AAATAGGGAG TAGTGAGGCC TTGTACAACC 
    CGACGGAGTG AGAGGGACCC AAGCCGACAA ATCCCTAGCG CCCGCGACTC 
    CGCAAATCGT GACCGGCGGC GATCGATCGA TCGATGCCAC CGAAATTGCG 
    GAGGAGGTCG ACGGGGGCGG CACTATCCCA CGCCGCGAGT GGAGAAGAAG 
    CTCCCAAATC ATCGGAAACG AGTCCTGCTC CAGCGGCGGC GGCGGCGGGC 
    AGTGGAAGGT GGACTCGATC TAGATCAGCG AGGAGTCACC TAGGGTTGGA 
    TTCGGATTCT ACCGACCACC CTAGGGTAGT GTCGGGCTCT TCTGATCAAC 
    CGCCGAAGAA GAGGAAGAAG ACGACAACGG CGGTGGCCGC CGCCGCCGGC 
    AGTACAAGGC TGGCCTCCCG GCCGGTCCCT GGTCGCTACC CGGATTACCC 
    CAGTTTACGG CCAGGGCAAC ATGCTCTTAG CAAGAAACAC ATGAGTGCTG 
    TTCAAGAATG GATGGAGGAG TGCAGCAGGA TCAGCAAGCT CGAGAAACAA 
    GCTCGTCCTG AAGATATCCC CACTCTCAGA GATAACCCCC GGGATCCCCT 
    CACTCCTGAT GCCGTGGTCA GCTCACAAGA CAAGGCCATG GTGCTGCGTG 
    TGGCTCGTTC CGTTGTCAGT GTTTCATCCT CAAAGCCTGA TGGGGAACTG 
    ATTTCCCAGT GCACCGGCAT CGTGATTGGT TGGGATGGGG CCAACAAGTG 
    CGCCAAGATC CTGACCTCTT GTTCTACGGT GTGCGACTTC GACGGTGAAT 
    TTATTCAAGC TATCCGTTCG TATGCCAAAT AGGACAATTA CAGAAGGACG 
    GTTGTTATTC TTCAATGTAC ACTATGGTAT CGCTCTTTTG GAGGTCAAGG 
    GAGACTTCCA GTTGCAGGTC CCTTCTTTTG GCTTGGGCAT AAACTATGGC 
    CAGGATGTAT TTGCATTGGC TAGGGATGAA AACATGTCCT TAATGGTTAG 
    GCATGGAACA ATTTCATGGC TGGATTATCC TGGGTTATTG ACCAATCCCT 
    ATATGTTTCT GAGTTGTGAT ATTCCCGAGG GTGGTTCAGG AGGGCCGGTG 
    GTTGACCATG ATGGTAATAT CATTGGAATT GCATTTGATA GAAACCCGGG 
    TCCGGTTGTT ATCTCTATCA CTACAATCAG AACTTGCATT GAGATGTGGC 
    ATCAGTTTAG CCGTGTTGCT CGTCCCATGC TTGGCATGCA ATTGAAGGCT 
    GTGGAACTAC TGGATGTCTC TATGCGGGAG GAACTTTGTC TTGAGTACAA 
    TATCACCGGC GGTTTCATTG TGAATCTGGT AAAAGTTGAT TCTACTGCTG 
    AGAGAATCGG TATTAGACGA GGGGACGTGA TTGTTTTTAA GGATAACCGT 
    TGTTCTACTT TACCTCAGTT AGAAGATTAC CTCCTTTCTC TTGGTTGGGG 
    ATACCTGCAG GGCTTAAGCT TTACAGTAGA TCTCAAGGTT GAAGTTCATA 
    ATCTCGCCGA CTCATATAAG GAAAGCATTA CTTTCCCTGT ACCGTTCTCT 
    GATGCTTCTA AGCGGGTTGA CTGATGGTGT ATATGACAGG TGCTATAAGA 
    TTGAAGTCTT AGAGATGCTG TAAGATTGAA GTCGCCTAGA GTTATATGAC 
    TGACCAAAGG ATATGTAATA TACTTCTTTT AGGATAATTT ATCAAGTCAT 
    GTTATCAGCG ATGTAACCTC ATTGCCTAAA TGGTTGTGCT AATATTTTAT 
    ATGAATATTC TGCAATGGTG AGATTTAGTA ATTTACAAGA TGAGCAATAA 
    ACACAAATGC AATGTAAGCT TGATAGAATT TTTTGAGGTA AAACAAAAAA 
    AACAAACCTA AGTTACAGGA TATGACACCA AACAAAATTG ATAGTCCCAT 
    AGTATTCCAC ATAACCCTAT TGATGGAGTT CAAAATCTTG CAGTTCAGCA 
    CATACTCCGG CTTAGGTTGT TGCTTCATCA ATAAGCACAA TATTACTTTG 
    GCTGTGAAGC TTAATTATGG CTTTGCCCAG TATGGTTGAT TGCACAAAGG 
    TTGATGGGCC TAGATGACGA GGACAAAATG TGGAGTCTTA TAGAAGAAGT 
    GTGGGTGGAG ATGCTCTTCT TCTCCGCTGG TAGATGTCGA GGATACTTGC 
    ATGCCAAGAG CCTTGGATCA GGCGTTGATA TTGTGGCTCC TGTTGGCACA 
    TGCAGGAATG GAGGCATTCC CTGAGAGGCT TCAGAGGAGA CAATAGTGCC 
    GCTTGCTGAA AAGGAAGCCT CGGGAGAACA GACAAGATGG TGGCACTAGT 
    CCTTCAAATT CCCGAGATTT CAAGCCTCTC AGAGCAAGTA TAATAGTGAG 
    CTATAAGCTT GCTATAAGCT TATGTGGAGG AGAGAGGTAA CAAAAAATCA 
    AAGGTGTTGG CTCTCATGCA AGAGCTAACT TAACACAAAC TCCAAGACAA 
    AAACAATAAA TGTATAAGTG AGAGATAGAG ATAGGAGAAG AAAATTATAG 
    CTAAACCTTA TAGCTAATCT ATTATATGTG TTAGCTTTAA GATAGGCTAA 
    TACTCCAGTA GATAGTGAGC TCTATTATTA TCCTTGCTCT CAATATCGAT 
    GAAGAAGATG CAGCTACTCC ATCTGGAACT TCCCAAGGCA CAGAGTCTTG 
    TAATAGCTAA CTATTGTGCA CACTAACTCT TGTTAAACTA AATTTAGTTG 
    ATGTATCAGC TCATCCCCCT AGGTGAAGGC AGTAATTCCC ATGAGCTCAA 
    GGAGATTGTT GTCTCACCAT AGCAACATGC AGCTTCATCA TTGTTTGCGT 
    AATTGCGTTT AGTGTGTAAT TGTCTTAATA TGCCAGTGTA ATGTTAATGT 
    CCGTTCCATT TGTTGTATAC CATGTCAGTG AATCAAATTC ATATAATTGT 
    GCC

    Gene models with high sequence identity

    1. AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
      E-value: 6e-09; Score: 60.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR22939 1.89999859865843e-11
    superfamily Serine/cysteine peptidase, trypsin-like 2.4e-21
    HMMPfam Peptidase S46 0.07
    Gene3D G3DSA:2.40.10.10 1.60000065022528e-08
    HMMPfam Protein of unknown function DUF594 4.7e-14

    See the detailed result >

    AT5G27660.1

    Model type
    Protein coding
    Short Description
    Trypsin family protein with PDZ domain
    Computational Description
    Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR