K13438

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13438

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K13438

Determination of introduced cDNA(s)

  • J013042D13 - Rice Full-length cDNAs - Original: J013042D13

    full reading [+] show sequence

    Nucleotide sequence: J013042D13 - full reading
    GGCCGCACTT CATCCCCCCC TCCCCTCCCT CCCTCCGCCG GAGCGCCGTC 
    TCAAAATGGC CGCCACCTCC TCCACCGCCT CCGCCATGGC GGTGGCCGCC
    ACCTCCCCTA CCATTGCCAC TGCGCCATTC TCGTCTCTTC CTCTCCGCCT
    TCGCCTCCGC CCCAAACCCC TCCTCTTCAC TTCTCGCCTC CTCCTCCCCG
    TCCCCAAGTC CTCCTCCTGG GTTGAATCCG TCTCGGAGGA AGGGGAGGAA
    GAAGGCGTGG AGGAGGATTC CGAGGAATCC GGTGCCGCGG GGGAAGACGA
    TGACGGGGAG GACAACGACG AAAAGCCGCG GCCTGAGCCG GTGGCCGCCT
    CTGGGTTCGA GTTCGCGTCG CCGCCGGAGG GCTACGTGGA GCCGGCCCCG
    TTCGACGAGC TGCCCCCGGA GTCGCCCGAG GACGTGGCAG CGGCGTACGA
    AGCGCTCTAC GGGCCGGCCT TTAGCGGCGA GACGGTCATG GGCAACAACG
    TCTTCGAGGT CAAGGTGGTG GATCCCGTCG ACATGGACCG GGAGCAGCGC
    CCTAGCGACG AGTTCAGCGA GCGGGTCGTG CAGGTCAATC GCGTCACCAA
    GGTCGTCAAG GGCGGGAGGC AGTTATCCTT CCGTGCGATC GTCGTCGTCG
    GCGACATGAA GGGCCACGTC GGTGTGGGCG TTGGCAAGGC CAAGGAGGTC
    ACCGAGGCCA TCACCAAGGC CGCCATGAAC GGCCGTCGCA ATCTCGTCAC
    CGTGCCGCTC ACCAAGTATT CGACCTTCCC GCATAGAGCA GATGCAGACT
    ATGGAGCAGC CAGGGTCATG TTGAGGCCTG CTTGCCCTGG ATCTGGTGTA
    ATTGCAGGTG GAGCTGTGAG GGTCGTGCTG GAGATGGCTG GGGTTGAAAA
    TGCTCTGGGG AAACAGCTGA GGAGCAAGAA CCCCCTCAAC AATGCAAGAG
    CTACCATCAA GGCGACCCAA ATGATGAGGC AGTTCAAGGA TGTTGCTGCA
    GAGCGCGGGC TTCCAATGGA GCAGCTATGG AAATAATCAA ATAAATCAAC
    CTTAAATTCC CTCCAATATT TTTCTTTCTC CATTTCTTGA GTTCATTTTC
    AGTTGTATCT GTCAGTGGGG ATAATCCTAC ATTTAAGTCC TCTCCCCACC
    CTAAATGCAT TATGTGTCTC CACATATACA TGGCAAAGCT TTAGATGAAT
    TGATCTGCGA ATACCTTTAG CTTCACTAGT AATAGTGCAT GTGCAAGACA
    CGTTCCGCAC GTATAAATGC GAGTTTATTA TGTTTTCCCA CTATGC

    Gene models with high sequence identity

    1. AT2G33800.1 [+] show detail - Ribosomal protein S5 family protein
      E-value: 2e-59; Score: 226.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ribosomal protein S5, N-terminal 25.061
    PatternScan Ribosomal protein S5, N-terminal, conserved site 0
    HMMTigr Ribosomal protein S5, bacterial-type 3.2e-79
    superfamily dsRNA-binding domain-like 1.6e-22
    superfamily Ribosomal protein S5 domain 2-type fold 8.9e-22
    Gene3D Double-stranded RNA-binding-like 3.5e-21
    Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 6.4e-18
    HMMPfam Ribosomal protein S5, N-terminal 3.4e-27
    HMMPfam Ribosomal protein S5, C-terminal 6e-25
    HMMPanther 30S RIBOSOMAL PROTEIN S5 9.4e-70
    HMMPanther Ribosomal protein S5 9.4e-70

    See the detailed result >

    AT2G33800.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S5 family protein
    Computational Description
    Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cadmium ion, response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5, bacterial-type (InterPro:IPR005712), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G64880.1); Has 8967 Blast hits to 8967 proteins in 2880 species: Archae - 262; Bacteria - 5121; Metazoa - 552; Fungi - 265; Plants - 165; Viruses - 0; Other Eukaryotes - 2602 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR