K13504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13504

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K13504

Determination of introduced cDNA(s)

  • J033042I24 - Rice Full-length cDNAs - Original: J033042I24

    full reading [+] show sequence

    Nucleotide sequence: J033042I24 - full reading 
    GCTTTCTGCG CCGTCGATCC ATCCATCCGG CCTCGCCGAT CCCCATCACC 
    TGCGACGGCG AGCAGCGTCG CCGGCGTCCG GCTGCCTCCG CCGCATACTC 
    GGCTCGGTCG TCTTCTCGAC CTTCACTCTC CGGAGGTCTC CTCGCTAGCC 
    CCGCCGCGCC GATTTCCATC CATCCCTCCC GCGAGGTGGG TGCCGCCGTC 
    CTGCCGCTTC CGCCTCCGCT CCGGTTGGCT CCTGAAGTTG ATTAGGTGGT 
    GCCATGGGTT CAAAGGATTC TCAAGTCGAA GCTACTTTAC AAGATGGGAA 
    CAAAGAAGAT GAAGAGGATG ATTGGGAGGC GATTGCAGAT CGTGGTGAAA 
    ACGATGAGAC GCTAACGCTA GCGCGTTCTC TCGAGCAGCA AGCAAAGGTT 
    TCTCCTAGTA GTTCTTCTGA GAAAATTAGC ACTCCATCTT CAGGGCCCAA 
    GAGGAGGGGA AGGGGTTCGT TTCTTTACGA CAAGAGTGTT CTATACAGTG 
    ATCAGTGTGG TCTAGAAAAT GATATGGATG AACAAGAGTC TAATGATCAG 
    AGTGGATCAA AGGGCCGTGT GGATGAGCAG AAACACAAGA GTAATGCAGC 
    TGCGAAACAA TATGGGACAA GGCATGTCCT TGTTCTTTAT GACTTCCCAC 
    CTAGCACACT CGCAGCAGAT TTGGAAAAGA TTTTCGACAA GTTTGGGGAC 
    CATGGAGTTG CCATTCGCTG GGTTAATGAT ACTGTTGCAC TTGCAGTTTT 
    TCGGACTCCA TCAGCTGCTA ATGAGGCACA AGCTTGTATA CCTCCAAGAT 
    ATAAAGTGCG GCCACTAAAA GAGGATGACG ATCTCTTGAC AAAAAATGAT 
    GGCATAGACC TTGAACCACC AACTCCAAGG CCGAAGACAT CTGCAAGAAC 
    AGCACAAAGG CTGATTGCTC ATGGAATGGG GCTAAGGCAG TTTACAAACT 
    TCGGGTCAGA CGAGCTGAAG AAACAAGAGG AGGCGAGGAG GAGTCGAATC 
    GCTGCTCGAC AAGCTTTGCG GGACGACGCA TGGGGTTCAG ATTGACTGAT 
    TCGCCGCCTT CATGGATCAT CGCCTCTAGC AGCCAGGCTG CTCCCAGGCC 
    TGGTGCCATT TTGTGTGACC TGTGGCTGTG GGTGCTTAAG ACCATGTCTC 
    TGTACTTGGG TTGGTTTGTG CCGTTTCTTT CCGACAGAGA GGAACAGAGG 
    TAGCGATCAA GATATATAGA TAAACTCGCG TCGCCCAAGC AAATGTCAAG 
    CATGGCGGAG TATGAATTTA CTGTAAGGGA ATACCCTGAA TTCTGGCGGT 
    TTTGGTAGAC CGTAATTCCC TGGATTGATA CGTGCTTCTT TCAGAAATTC 
    TGGAAATGTG TCTTATTTCC GTAGTTC

    Gene models with high sequence identity

    1. AT5G22120.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 6e-46; Score: 182.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G22120.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR