K13506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13506

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Original: K13506

Determination of introduced cDNA(s)

  • J023044P22 - Rice Full-length cDNAs - Original: J023044P22

    full reading [+] show sequence

    Nucleotide sequence: J023044P22 - full reading
    GATAGCTTCG CCATTTCAAA TCTTTGCTTA GGAGTAGCGA TCGAGAGAGG 
    CAATGGAGGT GGAGATGGGG CACGGAGAGG AGGTGGCGGC GGCGATGGAG
    GAGGAGGAGC TGCAGGGGTG GGAGACGCCG AGGAGGGAGG AGTGCCGCAT
    CCCGGTGGTG CCGCCGCAGT GCCCGGCGCC GCCGAGGAAG AGGCCGGTGG
    CGCTGCCGGA GCTGGGGAAG GAGCGGCGGG AGCCGCCCAA GGGCGGGTAC
    TTCCAGCCGC CGGACCTCGA GTCGCTCTTC GTGCTCGCGC CGCCGCGGAG
    GCAGGCGTCC AGCTGCGCGT AGTGCTGCTG CGCCCAGTCT CCGTGCAGCA
    GCACGCACAG TGTGTTGGTT GCTGCTACTC CTACATTATA GTAGTGTTAC
    TAGTACAGCT TTAGCCTTTT GTGTAGGGAT TGCTGCTAAC TCTGCAGTTG
    CATCTTGTTT GGTGGTTTTT TTTGTGGAGC AAGATGGATG TGCATTTGCT
    GTTCTGCTTT TGTGATGGGA AGTAGCTGTA TCTATCTACC GCCCTGCGTG
    TGAAATCCTG TTAATTTAGC AGGGGGAAAA AAACCCTATG TATCTATGTA
    CATGTTATTC CAAGTTCAGA AAATGGGAAA AAAATGTTCC TGAACTTCTG

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J033149N11 - Rice Full-length cDNAs - Original: J033149N11

    full reading [+] show sequence

    Nucleotide sequence: J033149N11 - full reading
    GGCGGCGACA CTGACAGTCT CCTCTTCCAC CACTGGCCTA GGGCAAGAGA 
    TCGACGAGAG GAGCGGAGGG AGGAGGAGGA GATGGGCGGA GTGGAGCAGG
    AGCAGCTGCT CAGCCTGGGC GTCCTCATCG ACATCGTCGA CGAGCAGTGG
    ATGCGCGACA CCCTCCCAGC CGACGATGTC CCCGTGCCGC CCGCCATGGC
    CGTGAAGACG GAGGAGGCGG AGGATCCAGC ACCCGCCAAT CAGGAAAGCC
    AACCAGCACA AGGGGATGTG TGGCGTGATT TCACATTGGA GAATCTCTGA
    TCACTTGTGA CCTACAAGTG CTTCCAGAGA TGAATATACC ATGCTGGGAA
    TCTAGGAGCT ACGTGGTCAT TGCAATTTCT GAGCTTCATA TAACTATAAG
    GTCATCTGAA CTTAGCGTAC TATCTGGTTT TGTTTCAGCT GTAGTTCGTC
    GAACCCATGC TTTAAACCGA TGTAAATGCT CCAGATATTG GTAGCACATT
    GCTGCATGAT GACACCGAAC CTTGTGATGA GAAATTATAT GTTGTGAACT
    ATGATGGTGA TGAGAACAGT CATTCAGATC TGGAACATAT CAAATCACTG
    GTAGTTTGCA GTC

    Gene models with high sequence identity

    1. AT1G73177.1 [+] show detail - bonsai
      E-value: 3e-10; Score: 62.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G73177.1

    Model type
    Protein coding
    Short Description
    bonsai
    Curator Summary
    The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.
    Computational Description
    BONSAI (BNS); Has 44 Blast hits to 44 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR