K13506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13506

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
petal (PO:0009032)
  • abnormal (PATO:0000460)
    (Flower::Shape::petal)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Original: K13506

Determination of introduced cDNA(s)

  • J023044P22 - Rice Full-length cDNAs - Original: J023044P22

    full reading [+] show sequence

    Nucleotide sequence: J023044P22 - full reading 
    GATAGCTTCG CCATTTCAAA TCTTTGCTTA GGAGTAGCGA TCGAGAGAGG 
    CAATGGAGGT GGAGATGGGG CACGGAGAGG AGGTGGCGGC GGCGATGGAG 
    GAGGAGGAGC TGCAGGGGTG GGAGACGCCG AGGAGGGAGG AGTGCCGCAT 
    CCCGGTGGTG CCGCCGCAGT GCCCGGCGCC GCCGAGGAAG AGGCCGGTGG 
    CGCTGCCGGA GCTGGGGAAG GAGCGGCGGG AGCCGCCCAA GGGCGGGTAC 
    TTCCAGCCGC CGGACCTCGA GTCGCTCTTC GTGCTCGCGC CGCCGCGGAG 
    GCAGGCGTCC AGCTGCGCGT AGTGCTGCTG CGCCCAGTCT CCGTGCAGCA 
    GCACGCACAG TGTGTTGGTT GCTGCTACTC CTACATTATA GTAGTGTTAC 
    TAGTACAGCT TTAGCCTTTT GTGTAGGGAT TGCTGCTAAC TCTGCAGTTG 
    CATCTTGTTT GGTGGTTTTT TTTGTGGAGC AAGATGGATG TGCATTTGCT 
    GTTCTGCTTT TGTGATGGGA AGTAGCTGTA TCTATCTACC GCCCTGCGTG 
    TGAAATCCTG TTAATTTAGC AGGGGGAAAA AAACCCTATG TATCTATGTA 
    CATGTTATTC CAAGTTCAGA AAATGGGAAA AAAATGTTCC TGAACTTCTG

    Gene models with high sequence identity

    Not founds.

     

    InterPro Scan Digest

    See the detailed result >

  • J033149N11 - Rice Full-length cDNAs - Original: J033149N11

    full reading [+] show sequence

    Nucleotide sequence: J033149N11 - full reading 
    GGCGGCGACA CTGACAGTCT CCTCTTCCAC CACTGGCCTA GGGCAAGAGA 
    TCGACGAGAG GAGCGGAGGG AGGAGGAGGA GATGGGCGGA GTGGAGCAGG 
    AGCAGCTGCT CAGCCTGGGC GTCCTCATCG ACATCGTCGA CGAGCAGTGG 
    ATGCGCGACA CCCTCCCAGC CGACGATGTC CCCGTGCCGC CCGCCATGGC 
    CGTGAAGACG GAGGAGGCGG AGGATCCAGC ACCCGCCAAT CAGGAAAGCC 
    AACCAGCACA AGGGGATGTG TGGCGTGATT TCACATTGGA GAATCTCTGA 
    TCACTTGTGA CCTACAAGTG CTTCCAGAGA TGAATATACC ATGCTGGGAA 
    TCTAGGAGCT ACGTGGTCAT TGCAATTTCT GAGCTTCATA TAACTATAAG 
    GTCATCTGAA CTTAGCGTAC TATCTGGTTT TGTTTCAGCT GTAGTTCGTC 
    GAACCCATGC TTTAAACCGA TGTAAATGCT CCAGATATTG GTAGCACATT 
    GCTGCATGAT GACACCGAAC CTTGTGATGA GAAATTATAT GTTGTGAACT 
    ATGATGGTGA TGAGAACAGT CATTCAGATC TGGAACATAT CAAATCACTG 
    GTAGTTTGCA GTC

    Gene models with high sequence identity

    1. AT1G73177.1 [+] show detail - bonsai
      E-value: 3e-10; Score: 62.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G73177.1

    Model type
    Protein coding
    Short Description
    bonsai
    Curator Summary
    The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.
    Computational Description
    BONSAI (BNS); Has 44 Blast hits to 44 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR