K13508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13508

Determination of introduced cDNA(s)

  • J033093D07 - Rice Full-length cDNAs - Original: J033093D07

    full reading [+] show sequence

    Nucleotide sequence: J033093D07 - full reading
    GTCGCCATCT CGCGGCTGAA CAGGGGAGGG GCGCCGATCT CCGTCTGGCG 
    CGCAGAGCAG GGGGAGGGGA TCCTGACTTC GATTAGTAAG GGTATTGGAT
    GAAGCTTGTA CTGATCTATG GAGGTGGGTG GTCCACAAGA TGCTCTGGAC
    AACAGAAGTG ATGATAATGA CTTTGATAAG AATGACAATT CTGATCCTGT
    TGTTTACCAG TTAGTTCGGG TTGAAGGTGA TGGAACACTT ATTCCTGCTA
    CGGAGGATGA GGTCTTACAG TTTGAAACTT TCCTTCATGA TGAGAAGGTT
    GATGATGATC TGCCTTCTAT TGACGATGTA ACACATGTGG AGGAATATTT
    TACTAATGAT TGCATAGTGA AGAAGCCTGA GTTTGAAGAG GGGCCTTCCA
    AATTAGACAC TGCAGATGTA CAGACACAAA AGTTAGATGC TGGCTTAGAG
    GAAGACAGGT TATGTACATT GAATGATTCG ATAGTTCTTC CTTCAAATTG
    TTCAGCTGTT CATGACCAGC AGCTGGATAA ACTAAATACA GAACAAGGGG
    CAAATATCAT TGCCCAACAG GACAATGCTT CGACTGAGAC TACAAAATCA
    ACAGTATTAA ATGACCTTTC TTCTGATAAA GAAAAGGCTG ATGCCTGCTC
    GAAACCTGTA AATGAGGCAT CTGCAGGACA ATCTGTTTCT GGGGTTACTA
    GTTCAGTTCC TGATTTTTCC ATTTTAAAGG GAGAAGTCTG CTTGGATGAT
    CTTACAATGA GAGAACTTCA GGAAGCATTT AGAGCCACAT TTGGGCGTCA
    AACTACTGTC AAGGACAAGC TATGGCTCAA AAGACGGATT GCAATGGGGT
    TGATCAATTC ATGTGATGTT CCAAGTTCAG GTTGTGTTGT TAGGGATTAT
    AAAGTTATTG CCATGGGTGC CAAACAAGAA ATACCAGTGG TTGAAGCAAT
    ACCAAAGATG GAACTTGAGG CTAATTTGGT TAGGGACCAA GTAATGAATC
    CTGGACATGA GAGAGATTTA CCATCAAGTC TTTCCTATCA TAGTGAGGAG
    CAACAGAGAT CGTCCAAGAG ACTCAAAAGA GTACCAACAG ATAATGATGA
    ACCACAAGTA ACTATTTTTG CCGAACAAGG AACTACTAAG AGAATTAGAA
    AGCCAACAAA AAGATACATT GAGGAGCTCT CAGATATTGA CACTCATGAA
    TCCACTGGGA GACTTTCTTC ACCTGGAAAA AGGCATGTAT ATGATGAGGT
    GTTATTGAGA CCACGGATAG CGCCTTTGCA TGAGGTTGAT TCGTTGAGCA
    CAGCCTATCC TACTAGAGAA GATACTCTTG GAGGGTGTAG TGTGCATGTG
    CCTTATGTTT CAAGGATGAG AAGGGGGCGC CCTAGGAGTA ACTTCATTCC
    ATTTTTGGAT CCTGAGCCTT CTGTGGAATG TACTGAGGCC CCTGCTGCAG
    ATGTAGTGAA TTTGGAAAAG GAAGGTGAAC GGAAGAACCA TAAGAACACT
    GGGAAGAAAG GAGTACATGT AGAAACATCT TGTGAAAAGG ATGTTCAGGG
    TCTGCAGGAC AAGGATTTTT GCGACTCTGA TGACAATCCC AAAACAAAGC
    GGGGTGGGAA GCGGAAGCAT CATCGAGCAT GGACATTGTG TGAGGTTGTG
    AAGCTGGTCG ATGGTGTGGC CCGATATGGG GCTGGCAAAT GGTCCGAGAT
    TAGAAGACTA GCCTTCTCAT CATATTCGTA CCGCACCTCG GTGGATCTTA
    AGGACAAATG GCGGAATCTG ATCAGGGCCA GCCAGACACA ACTTTCCACT
    GAAAACGATG GTGTTTGTCC ACGGAAGAGC AATCCTTCTG CCATACCGAT
    ACCAGTGTCG ATTCTGCTAC GAGTAAAAAA ACTGGCTGAG ATGCAGTCTC
    AAGCTGGCGA CGTGGGAGTG CCGATCAAGT TTTCAGGGCA GAGCACTACG
    GTTGTACAGG GGAAAGTTTC GGGTTTCTTG TGATCCACGT GTTGCATGCA
    AATAGAGGGG GAAACCACTG AGATTGATGT ACGCTTTTGG ACGTCTGTGA
    ATACCACACT TGTATAGCAA AGTTGTGATC GCGACTCGCG TTCTCGTGCA
    AAAGAAAGAG TCGACGTATG TATTGTTTGC TCCTTTTTCT ACACACGAAC
    ACTTCCTATG TTCTCCGAGA GATTTGACTA ACGTACCTTG AGATTGACAT
    AGTCACCTTA AACACCTTGT TATTGAAAGA ATAAATGCTC CTTTTTCGTT
    TGCACGG

    Gene models with high sequence identity

    1. AT1G72650.2 [+] show detail - TRF-like 6
      E-value: 8e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 3.3e-15
    superfamily Homeodomain-like 2e-09
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 13.899
    HMMSmart SANT, DNA-binding 9.5e-07
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 1 1.4e-05
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 1.4e-05

    See the detailed result >

    AT1G72650.2

    Model type
    Protein coding
    Short Description
    TRF-like 6
    Curator Summary
    Arabidopsis thaliana myb family transcription factor (At1g72650)
    Computational Description
    TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR