K13508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13508

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • increased length (PATO:0000573)
    (Silique::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13508

Determination of introduced cDNA(s)

  • J033093D07 - Rice Full-length cDNAs - Original: J033093D07

    full reading [+] show sequence

    Nucleotide sequence: J033093D07 - full reading 
    GTCGCCATCT CGCGGCTGAA CAGGGGAGGG GCGCCGATCT CCGTCTGGCG 
    CGCAGAGCAG GGGGAGGGGA TCCTGACTTC GATTAGTAAG GGTATTGGAT 
    GAAGCTTGTA CTGATCTATG GAGGTGGGTG GTCCACAAGA TGCTCTGGAC 
    AACAGAAGTG ATGATAATGA CTTTGATAAG AATGACAATT CTGATCCTGT 
    TGTTTACCAG TTAGTTCGGG TTGAAGGTGA TGGAACACTT ATTCCTGCTA 
    CGGAGGATGA GGTCTTACAG TTTGAAACTT TCCTTCATGA TGAGAAGGTT 
    GATGATGATC TGCCTTCTAT TGACGATGTA ACACATGTGG AGGAATATTT 
    TACTAATGAT TGCATAGTGA AGAAGCCTGA GTTTGAAGAG GGGCCTTCCA 
    AATTAGACAC TGCAGATGTA CAGACACAAA AGTTAGATGC TGGCTTAGAG 
    GAAGACAGGT TATGTACATT GAATGATTCG ATAGTTCTTC CTTCAAATTG 
    TTCAGCTGTT CATGACCAGC AGCTGGATAA ACTAAATACA GAACAAGGGG 
    CAAATATCAT TGCCCAACAG GACAATGCTT CGACTGAGAC TACAAAATCA 
    ACAGTATTAA ATGACCTTTC TTCTGATAAA GAAAAGGCTG ATGCCTGCTC 
    GAAACCTGTA AATGAGGCAT CTGCAGGACA ATCTGTTTCT GGGGTTACTA 
    GTTCAGTTCC TGATTTTTCC ATTTTAAAGG GAGAAGTCTG CTTGGATGAT 
    CTTACAATGA GAGAACTTCA GGAAGCATTT AGAGCCACAT TTGGGCGTCA 
    AACTACTGTC AAGGACAAGC TATGGCTCAA AAGACGGATT GCAATGGGGT 
    TGATCAATTC ATGTGATGTT CCAAGTTCAG GTTGTGTTGT TAGGGATTAT 
    AAAGTTATTG CCATGGGTGC CAAACAAGAA ATACCAGTGG TTGAAGCAAT 
    ACCAAAGATG GAACTTGAGG CTAATTTGGT TAGGGACCAA GTAATGAATC 
    CTGGACATGA GAGAGATTTA CCATCAAGTC TTTCCTATCA TAGTGAGGAG 
    CAACAGAGAT CGTCCAAGAG ACTCAAAAGA GTACCAACAG ATAATGATGA 
    ACCACAAGTA ACTATTTTTG CCGAACAAGG AACTACTAAG AGAATTAGAA 
    AGCCAACAAA AAGATACATT GAGGAGCTCT CAGATATTGA CACTCATGAA 
    TCCACTGGGA GACTTTCTTC ACCTGGAAAA AGGCATGTAT ATGATGAGGT 
    GTTATTGAGA CCACGGATAG CGCCTTTGCA TGAGGTTGAT TCGTTGAGCA 
    CAGCCTATCC TACTAGAGAA GATACTCTTG GAGGGTGTAG TGTGCATGTG 
    CCTTATGTTT CAAGGATGAG AAGGGGGCGC CCTAGGAGTA ACTTCATTCC 
    ATTTTTGGAT CCTGAGCCTT CTGTGGAATG TACTGAGGCC CCTGCTGCAG 
    ATGTAGTGAA TTTGGAAAAG GAAGGTGAAC GGAAGAACCA TAAGAACACT 
    GGGAAGAAAG GAGTACATGT AGAAACATCT TGTGAAAAGG ATGTTCAGGG 
    TCTGCAGGAC AAGGATTTTT GCGACTCTGA TGACAATCCC AAAACAAAGC 
    GGGGTGGGAA GCGGAAGCAT CATCGAGCAT GGACATTGTG TGAGGTTGTG 
    AAGCTGGTCG ATGGTGTGGC CCGATATGGG GCTGGCAAAT GGTCCGAGAT 
    TAGAAGACTA GCCTTCTCAT CATATTCGTA CCGCACCTCG GTGGATCTTA 
    AGGACAAATG GCGGAATCTG ATCAGGGCCA GCCAGACACA ACTTTCCACT 
    GAAAACGATG GTGTTTGTCC ACGGAAGAGC AATCCTTCTG CCATACCGAT 
    ACCAGTGTCG ATTCTGCTAC GAGTAAAAAA ACTGGCTGAG ATGCAGTCTC 
    AAGCTGGCGA CGTGGGAGTG CCGATCAAGT TTTCAGGGCA GAGCACTACG 
    GTTGTACAGG GGAAAGTTTC GGGTTTCTTG TGATCCACGT GTTGCATGCA 
    AATAGAGGGG GAAACCACTG AGATTGATGT ACGCTTTTGG ACGTCTGTGA 
    ATACCACACT TGTATAGCAA AGTTGTGATC GCGACTCGCG TTCTCGTGCA 
    AAAGAAAGAG TCGACGTATG TATTGTTTGC TCCTTTTTCT ACACACGAAC 
    ACTTCCTATG TTCTCCGAGA GATTTGACTA ACGTACCTTG AGATTGACAT 
    AGTCACCTTA AACACCTTGT TATTGAAAGA ATAAATGCTC CTTTTTCGTT 
    TGCACGG

    Gene models with high sequence identity

    1. AT1G72650.2 [+] show detail - TRF-like 6
      E-value: 8e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 3.3e-15
    superfamily Homeodomain-like 2e-09
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 13.899
    HMMSmart SANT, DNA-binding 9.5e-07
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 1 1.4e-05
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 1.4e-05

    See the detailed result >

    AT1G72650.2

    Model type
    Protein coding
    Short Description
    TRF-like 6
    Curator Summary
    Arabidopsis thaliana myb family transcription factor (At1g72650)
    Computational Description
    TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR