K13516

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13516

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13516

Determination of introduced cDNA(s)

  • J013155M12 - Rice Full-length cDNAs - Original: J013155M12

    full reading [+] show sequence

    Nucleotide sequence: J013155M12 - full reading 
    GAGACATGAG GAAATTCATA GCAGCACTGC GGCTTGCACT AGCAGCAGCA 
    GCTCATCTGC TGCTGACGCT GCCACCGGCA CAATGCTACT GGCTCAACCC 
    GGAGATCTAC GACGCCGGCG GGCTGAGCCG GCGAGCCTTC CCGGAGGGGT 
    TCGTGTTCGG CACGGCCGCG TCGGCGTACC AGGTGGAGGG CATGGCGAAG 
    CAGGGTGGCC GGGGCCCTAG CATCTGGGAC GCTTTCATAG AGAAACCAGG 
    GACGATCCCT AATAATGCCA CAGCCGATGT GACGGTTGAT GAGTATCATA 
    GGTACAAGGA AGATGTGAAC ATAATGAAGA ACATGGGCTT TGATGCGTAT 
    AGATTTTCGA TCTCTTGGTC AAGAATTTTA CCAAATGGGA CTGGGATGGT 
    GAACCAGGAA GGAGTTGATT ATTACAACAG GTTAATAGAT TACATGGTTA 
    AGAAAGGCAT CAAACCGTAC GCAAACCTCT ACCACTATGA CCTACCATTA 
    GCACTCCATG AGCAGTACTT AGGCTGGCTA AGCCCAAACA TCGTGTAAGC 
    ATTTCAACTT GAAAACTATG AACTTCAAAA TTTGTAAGCT GATTGAAGCA 
    TATATTTGAC CAAAGAAAAA ATGTGTATTC TACTGTGAAG AGAGGCGTTT 
    GCAGACTACG CAGATTTCTG CTTCCAGACG TTCGGAGACA GGGTGAAGGA 
    CTGGTTTACC TTCAATGAGC CGAGATGCGT TGCTGCTCTA GGATATGACA 
    ATGGCTTCCA TGCCCCGGGA AGGTGCTCTG GCTGTGATGC AGGAGGCAAC 
    TCCACGACAG AACCATACCT TGCTGCCCAC CATCTCATCC TTTCTCATGC 
    TGCCGCCGTC AAGCGATACC GCGAAAAGTA TCAGCTTTAT CAAAAGGGGA 
    GGATTGGAAT TCTCTTGGAT TTTGTCTGGT ATGAACCATT CAGTGACAGC 
    AATGCTGATA GGGCTGCAGC ACAGAGGGCA AGAGATTTTC ACCTCGGATG 
    GTTCCTTGAC CCCATTATCC ATGGTCGGTA CCCATACTCG ATGCTCGAAA 
    TCGTCAAGGA CAGGATGCCA ACCTTCAGTG ATGAGGAGTC CAGGATGGTG 
    AAAGACTCAA TAGATTATGT TGGCATCAAC CACTACACCT CTTTCTACAT 
    GAAAGACCCT GGGCCATGGA ACCTGACACC GACCAGTTAT CAGGATGACT 
    GGCATGTTGG GTTTGCCTAT GAACGAAACG GCGTGCCCAT TGGAGCTCAA 
    GCAAACTCCT ACTGGCTTTA CATTGTGCCA TGGGGAATCA ACAAGGCTGT 
    GACCTATGTA AAGGAAACAT ATGGAAACCC TACAATGATC CTTTCTGAAA 
    ATGGTATGGA CCAACCTGGC AACGTCAGTA TCACTCAGGG TGTGCATGAT 
    ACAGTAAGAA TCAGATACTA CAGAAACTAC ATCACTGAGC TCAAGAAGGC 
    GATAGACGAT GGTGCCAAAG TGATTGGATA CTTTGCTTGG TCATTGCTTG 
    ACAACTTCGA GTGGAGGCTC GGGTACACTT CCCGTTTTGG CATCGTCTAC 
    GTGGACTACA AGACGCTAAA GAGGTACCCC AAGGACTCAG CTTTCTGGTT 
    CAAGAACATG CTCTCCAGTA AGAAGAGGAA CTAAAGTATG CAGACAAAAG 
    GATCAAGCTG TGAAAGCCTC AAAGGCTTCC ACTGTCAGAT TTCAGAACAA 
    AGCTAACTCT AGCGTATGCT CATCGTAGCG CGTTAGTTTA GCTTTAGTTA 
    TATGTGAAAA ACAACCAATG TGGAGATTGG TAGCTTCACT AGCTTCTGCA 
    ACAGAAGGAG AAATAAATGG ATTGAACTTC AATACAGATT TGTTCATCAG 
    AACCGTAGGC TATTTGTACA ATAAAGAGCT GACAGAAGGG ACTATTC

    Gene models with high sequence identity

    1. AT3G18080.1 [+] show detail - B-S glucosidase 44
      E-value: 2e-180; Score: 629.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther BETA-GLUCOSIDASE 8e-86
    HMMPanther Glycoside hydrolase, family 1 8e-86
    HMMPanther BETA-GLUCOSIDASE 8.4e-161
    HMMPanther Glycoside hydrolase, family 1 8.4e-161
    FPrintScan Glycoside hydrolase, family 1 3.1e-20
    FPrintScan Glycoside hydrolase, family 1 3.1e-20
    FPrintScan Glycoside hydrolase, family 1 3.1e-20
    FPrintScan Glycoside hydrolase, family 1 3.1e-20
    FPrintScan Glycoside hydrolase, family 1 3.1e-20
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.3e-57
    Gene3D Glycoside hydrolase, subgroup, catalytic core 4.3e-109
    HMMPfam Glycoside hydrolase, family 1 1.4e-61
    HMMPfam Glycoside hydrolase, family 1 1.8e-95
    superfamily Glycoside hydrolase, catalytic core 7.7e-66
    superfamily Glycoside hydrolase, catalytic core 3.7e-115

    See the detailed result >

    AT3G18080.1

    Model type
    Protein coding
    Short Description
    B-S glucosidase 44
    Computational Description
    B-S glucosidase 44 (BGLU44); FUNCTIONS IN: in 6 functions; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosolic ribosome, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 43 (TAIR:AT3G18070.1); Has 11220 Blast hits to 10898 proteins in 1459 species: Archae - 142; Bacteria - 7700; Metazoa - 714; Fungi - 202; Plants - 1462; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR