K13604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13604

Determination of introduced cDNA(s)

J033108E14 - Rice Full-length cDNAs - Original: J033108E14

full reading [+] show sequence

GGAGTGGAGT GGTGGAAAAG GAGTTTACCG AAGGGCGAAG GGGACGACCG 
GAGGGGGGAG GCGGGGAGTG GGGAGATCGG GATCGGCGGG GGGGATGGCG 
TCGCCGGCGA AGGAGCGCGA CGGGGATGGG AGGCGGGCGC ACGCGACGAT 
GGTTGGGGTG CAGTTCATCA ACGCCGGGTA CCACGTCATC GCCAAGCAGG 
CGCTCAACGT CGGCGTCAAC CGCGTCGTCT TCTGCGTCTT CCGCGACGTC 
CTCGCCCTCG CCGTGCTCGC GCCCCTCGCC TTCCTCCGCC ACCGCGGGTC 
GCCTTCGCAG GCCCGCACGC CTCTCACCTG GCGCCTCCTC GTCTCCTTCT 
TCATCCTTGG GCTCACAGGC ATCTTCGCCA ACCAGCTTCT CTTCTTGTTC 
GGCCTCAGCT ACACCAATCC CACATACGCC GCTGCAATTC AGCCTTCCAT 
TCCTGTCTTC ACCTTCATCT TGGCCGCCCT CATGGGCACT GAAACGGTGA 
ACCTGAGCAC ACATGAGGGC AGGGCCAAGA TTGGTGGAAC GATCGTCTGC 
GTGATGGGGG CTGTTTTCAT GGTGTTGTAC AGGGGTCCTG CTTTGTTCGG 
TAGTGGCGAG CTCGAACTTG ATGATGCTCA TAGTCATGGT GTCATTGCTG 
ACATGTCACA GCCTGAGCCA GTCGGACCCT TGTCCATTGT GTTTGGGCTC 
CAAAAGTGGC ACATTGGAGT GCTGTGTTTG ACAGGGAACT GTCTTTGTAT 
GGCTACTTAT CTTGCTTTCC AGGCGCCAAT TTTGATGAAG TATCCGTGTA 
GTTTGTCATT GACAGCGTAC TCGTACCTTT TTGGTGCTGT TTTAATGGTC 
ATTTCAGGAG TTTTTGCAAC AAATTGTAAA GAAGATTGGA CTTTGACTCG 
ATCTGAGTTT GGTGCTGTTG TATATGCTGG ATTCATTTCT TCTGCTCTTA 
ATACTGGTTT ACTGACATGG GCCAACAAAA TTTTGGGCCC TGCTATGGTG 
TCACTTTATA TGCCTCTTCA GCCAGTGGTT TCTGCTCTAC TGTCGAAGTT 
TTTTCTGGGA AGCTCAGTTT ACCTTGCAAG TATTATTGGA GGGTTTCTGA 
TCATCTCTGG TTTATATCTT GTCACCTGGG CCCGGCATAG AGAAAAGTTG 
ACAATTGGAG TACCATATGA AACATGTGCA TCTGAGTTGC TTGAAAGTAC 
TTCTCATGTC GTAAAGAGCA GAAACATGGC CTCGGTACCC TATATATCGC 
TTTCTAGGCC GTCAAACGTT CCACATGAAT CATAACTCTT AAGAAGTTGG 
TCACTGCTAT CCCCTTCCTT ACTCAGAATA TAGATAGAGA AAGCATGCAT 
TAGAAAACAT GAAGTGCCGC AAAGAAGATT CAAGTGAACG TAGTTAAGAC 
TATATGTTAA CAATGCTGTC ATCTGTCCTT GGCTTAGTTC CCCATATGGC 
TTCTCTTCAG AAAACAGCAT TCTTATTCTT CATTTCCTAG GAGAAGTTGA 
TTTGTGTATG AGTAAAGAGA GGTTATGCTC ATTTAGTTTT GTGAGACTAA 
CAACTCTGAG GATGCTGCCT GAATTGACTG TCCTTTCACC AAATGCAAAG 
CCAGCTCAGA AGCTCCGTCG GCTTAGTGAA TCCCCAACAA GGCAACAATA 
CGTATCCTGT TAACCTCATG CATATGTAAT TACTCTGTAA ACATTATACA 
TGTGCGCAAG TCAGAGCGGT TAAATGACCT

Gene models with high sequence identity

AT4G19185.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
E-value: 7e-103; Score: 371.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF6, transmembrane	0.00000000004
HMMPfam	Protein of unknown function DUF6, transmembrane	0.00000000000049
superfamily	Multidrug resistance efflux transporter EmrE	0.0000000000057
superfamily	Multidrug resistance efflux transporter EmrE	0.00000012

See the detailed result >

AT4G19185.1

Model type: Protein coding
Short Description: nodulin MtN21 /EamA-like transporter family protein
Computational Description: nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT5G45370.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR