K13604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13604

Determination of introduced cDNA(s)

  • J033108E14 - Rice Full-length cDNAs - Original: J033108E14

    full reading [+] show sequence

    Nucleotide sequence: J033108E14 - full reading
    GGAGTGGAGT GGTGGAAAAG GAGTTTACCG AAGGGCGAAG GGGACGACCG 
    GAGGGGGGAG GCGGGGAGTG GGGAGATCGG GATCGGCGGG GGGGATGGCG
    TCGCCGGCGA AGGAGCGCGA CGGGGATGGG AGGCGGGCGC ACGCGACGAT
    GGTTGGGGTG CAGTTCATCA ACGCCGGGTA CCACGTCATC GCCAAGCAGG
    CGCTCAACGT CGGCGTCAAC CGCGTCGTCT TCTGCGTCTT CCGCGACGTC
    CTCGCCCTCG CCGTGCTCGC GCCCCTCGCC TTCCTCCGCC ACCGCGGGTC
    GCCTTCGCAG GCCCGCACGC CTCTCACCTG GCGCCTCCTC GTCTCCTTCT
    TCATCCTTGG GCTCACAGGC ATCTTCGCCA ACCAGCTTCT CTTCTTGTTC
    GGCCTCAGCT ACACCAATCC CACATACGCC GCTGCAATTC AGCCTTCCAT
    TCCTGTCTTC ACCTTCATCT TGGCCGCCCT CATGGGCACT GAAACGGTGA
    ACCTGAGCAC ACATGAGGGC AGGGCCAAGA TTGGTGGAAC GATCGTCTGC
    GTGATGGGGG CTGTTTTCAT GGTGTTGTAC AGGGGTCCTG CTTTGTTCGG
    TAGTGGCGAG CTCGAACTTG ATGATGCTCA TAGTCATGGT GTCATTGCTG
    ACATGTCACA GCCTGAGCCA GTCGGACCCT TGTCCATTGT GTTTGGGCTC
    CAAAAGTGGC ACATTGGAGT GCTGTGTTTG ACAGGGAACT GTCTTTGTAT
    GGCTACTTAT CTTGCTTTCC AGGCGCCAAT TTTGATGAAG TATCCGTGTA
    GTTTGTCATT GACAGCGTAC TCGTACCTTT TTGGTGCTGT TTTAATGGTC
    ATTTCAGGAG TTTTTGCAAC AAATTGTAAA GAAGATTGGA CTTTGACTCG
    ATCTGAGTTT GGTGCTGTTG TATATGCTGG ATTCATTTCT TCTGCTCTTA
    ATACTGGTTT ACTGACATGG GCCAACAAAA TTTTGGGCCC TGCTATGGTG
    TCACTTTATA TGCCTCTTCA GCCAGTGGTT TCTGCTCTAC TGTCGAAGTT
    TTTTCTGGGA AGCTCAGTTT ACCTTGCAAG TATTATTGGA GGGTTTCTGA
    TCATCTCTGG TTTATATCTT GTCACCTGGG CCCGGCATAG AGAAAAGTTG
    ACAATTGGAG TACCATATGA AACATGTGCA TCTGAGTTGC TTGAAAGTAC
    TTCTCATGTC GTAAAGAGCA GAAACATGGC CTCGGTACCC TATATATCGC
    TTTCTAGGCC GTCAAACGTT CCACATGAAT CATAACTCTT AAGAAGTTGG
    TCACTGCTAT CCCCTTCCTT ACTCAGAATA TAGATAGAGA AAGCATGCAT
    TAGAAAACAT GAAGTGCCGC AAAGAAGATT CAAGTGAACG TAGTTAAGAC
    TATATGTTAA CAATGCTGTC ATCTGTCCTT GGCTTAGTTC CCCATATGGC
    TTCTCTTCAG AAAACAGCAT TCTTATTCTT CATTTCCTAG GAGAAGTTGA
    TTTGTGTATG AGTAAAGAGA GGTTATGCTC ATTTAGTTTT GTGAGACTAA
    CAACTCTGAG GATGCTGCCT GAATTGACTG TCCTTTCACC AAATGCAAAG
    CCAGCTCAGA AGCTCCGTCG GCTTAGTGAA TCCCCAACAA GGCAACAATA
    CGTATCCTGT TAACCTCATG CATATGTAAT TACTCTGTAA ACATTATACA
    TGTGCGCAAG TCAGAGCGGT TAAATGACCT

    Gene models with high sequence identity

    1. AT4G19185.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 7e-103; Score: 371.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF6, transmembrane 4e-11
    HMMPfam Protein of unknown function DUF6, transmembrane 4.9e-13
    superfamily Multidrug resistance efflux transporter EmrE 5.7e-12
    superfamily Multidrug resistance efflux transporter EmrE 1.2e-07

    See the detailed result >

    AT4G19185.1

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT5G45370.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR