K13616

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13616

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13616

Determination of introduced cDNA(s)

  • J023021O21 - Rice Full-length cDNAs - Original: J023021O21

    full reading [+] show sequence

    Nucleotide sequence: J023021O21 - full reading 
    GGTGACCATC CCCCTCCGAG AGAGACGCAC GGTTGGGTTG GTTTCCTCTT 
    CTTCGCTCTT GAGAGATTTG AGCTGAGAGA GAGAGAGAGA GAGAGAGGAG 
    GGCTCTCGAT CGTCTTCCTT GTTGCGCGCG CGCGTTCTCT AATCGAAGTC 
    GATAGGATAG GAGGATAGTC TCCCCCGCTT GACTCGATCT TCTCCTTCCT 
    CTCAACCGGG GAAAGCAAGG CCATGGGCAA CTGCGCCAGC GCCATAGATT 
    CCTTCTTCTT CACCAAAAGG GCCAATAACG AGAACGACGA TGACGATGCT 
    GCCCCAGGAA TGTCTGCATC CAAGAGGACT ACTAGCTCCA CCACCACCGG 
    GAAGCTGTCA ACACTTAGTA ACAGTACTTT CATTCCATCC ACCATTAGCG 
    GTGTAAGCAC TGACGATGCT TATCCAGACG GCCAGATTCT TGAGTCCCGA 
    AATCTCAGGA TCTTCACCTT TGCTGAACTC AAGAATGCTA CCAAGAATTT 
    CAGGACTGAT ACAGTTCTTG GGGAGGGTGG ATTTGGGAAG GTTTACAAGG 
    GATGGGTTGA TGAGAGGACC ATGAATCCAT CCAAGAGTAG CACCGGTGTG 
    GTGGTTGCTG TCAAGAAGCT CAACCCTGAG AGTGTACAGG GAACGGAGCA 
    ATGGGAGTCT GAAGTGAATT TCCTTGGGAG GATTTCACAC CCCAACCTTG 
    TCAAACTCTT GGGCTATTGC AAGGATAATG ACGAACTACT TCTTGTGTAC 
    GAGTTCATGG CAAAGGGGAG TTTGGAGAAT CATCTGTTCC GCAGAGGAGC 
    AGTTTACGAG CCACTGCCTT GGAGCCTCAG ACTGAAGATT CTCATTGGTG 
    CAGCTCGTGG CCTTGCCTTC CTTCATTCAT CAGAGAGACA GATCATCTAC 
    AGGGACTTCA AGGCTTCCAA CATCTTACTA GATTCGAACT TCAATGCAAA 
    GCTCTCAGAC TTTGGGTTGG CCAAGCATGG TCCAGACGGT GGATTGTCCC 
    ATGTGACAAC ACGAGTGATG GGTACTTATG GCTATGCGGC TCCAGAGTAT 
    GTTGCTACCG GCCACCTGTA TGTGAAGAGT GATGTGTATG GCTTCGGCGT 
    CGTGCTGCTT GAGATGCTCT CTGGCCTGAG GGCGCTGGAC CCAAGCCGCC 
    CCAGTGGGAA GCTGAACTTG GTAGACTGGG CAAAACCGTT ACTGGCTGAC 
    CGGAGGAAGC TGAGCCAGCT GATGGACAGT CGTCTTGAGG GGCAGTATCA 
    TTCCAGGGGA GCCCTCCAAG CTGCTCAGCT CACTCTCAAG TGTCTGTCTG 
    GTGATCCCAA GAGCCGACCA TCCATGAAGG AAGTCGTTGA GGCTCTCGAG 
    AAGATCAAGT TGATTAAGAG CAAGTCGAGG GAGCCCAGGA ACAGCTCCTC 
    ACTGGTGCGT GGACAGGGGA ATTCTCCGAG GAGCGATAGC GCGAGGACGA 
    GCTCCAAGGG CAGATGATCG TAGAGATACA TAAGATTGGG CTGATTCTGT 
    TGGTGGTGGT GTAAAGTTTA ACTATAGTAG ATCTCAATTC TTGATGTCAT 
    GACGAAGTTT GCACCGATCA TGATGATCAA TGTAACAGTA CAAAAATATA 
    CTAAATCTTT ATAGCTGTCA TATAGTCATA TGCATAAATT CAATTATTTT 
    TGTATTGAAG CATCACGGGT TGCATCAGGT TGCACTGAGA ACAGCAAGAA 
    GTCATTGTCA GTTTATATGC TTTCCTTTCA TTTGGTTATA GTTTTATACA 
    AGTGATGAAA TTC

    Gene models with high sequence identity

    1. AT2G17220.2 [+] show detail - Protein kinase superfamily protein
      E-value: 7e-132; Score: 468.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-22
    Gene3D no description 9.4e-52
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.5e-163
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 2e-82
    HMMPfam Serine/threonine-protein kinase-like domain 3.2e-46
    ProfileScan Protein kinase, catalytic domain 40.654
    HMMSmart Serine/threonine-protein kinase domain 3e-48
    HMMSmart Tyrosine-protein kinase, catalytic domain 4e-36

    See the detailed result >

    AT2G17220.2

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G76360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR